Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H09
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51610.1 68414.m05814 cation efflux family protein / metal to...    29   1.8  
At1g76070.1 68414.m08834 expressed protein                             27   7.1  
At1g20240.1 68414.m02528 hypothetical protein                          27   7.1  
At3g57030.1 68416.m06348 strictosidine synthase family protein s...    27   9.4  
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot...    27   9.4  
At3g42940.1 68416.m04509 expressed protein                             27   9.4  
At2g43250.1 68415.m05375 expressed protein  and genefinder             27   9.4  

>At1g51610.1 68414.m05814 cation efflux family protein / metal
           tolerance protein, putative (MTPc4) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 457

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 356 WTTCSKIKLVHLRPPHTPMSLTATTTLWAEN*IFSXXXXXXWTSTP-VGRSSIHHSLSPR 532
           +T   ++K + +   H+  ++T  T LW    +FS      WTS+  V  + + HS++  
Sbjct: 97  FTRAKQVKRIEINDQHSQRAVT--TALWCNFLVFSLKFGVWWTSSSHVIMAEVVHSVADF 154

Query: 533 GNPA 544
            N A
Sbjct: 155 ANQA 158


>At1g76070.1 68414.m08834 expressed protein
          Length = 272

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 250 NLFHNNNHDFSAKAFATKNMPNIPQVPN 333
           +L HNN+H+++A      + P +P VPN
Sbjct: 40  DLHHNNHHNYTAANKMFFSGPMVPLVPN 67


>At1g20240.1 68414.m02528 hypothetical protein
          Length = 566

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 563 FEKEKLVLGSHEDLMNGVSNFFQPALKSSDVVGVLKRFSFPPRE 432
           ++ + LV+   +D +NGV + +   +KS +V+G  K +S   R+
Sbjct: 481 YDGKHLVVREMKDSLNGVVHVYDMEVKSWEVIGSTKSWSSRVRD 524


>At3g57030.1 68416.m06348 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 374

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 137 NFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVP 39
           +F+ +V +T  + L LW S P  GT  +  E+P
Sbjct: 231 SFVLVVETTTCKILRLWLSGPNAGTHQVFAELP 263


>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 661

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 109 SVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFS-A 285
           SVDL  ++     T G+  +++ G      + ++PG G   +     +        F+ A
Sbjct: 264 SVDLFKRLIKTMETKGIRAESLAGAMMYYARKYLPGLGRWQSGTSDSSKSRRRVVSFNLA 323

Query: 286 KAFATKNMPNIPQVPNFNTV 345
           KA +  +MP + Q+    T+
Sbjct: 324 KASSPSSMPPLDQIALLETI 343


>At3g42940.1 68416.m04509 expressed protein
          Length = 193

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 369 EHVVHSGTDSVEVRNLRNIWHVFSGEC 289
           E ++ SG D  ++  + N WH+F   C
Sbjct: 160 EDMLESGFDDKQIYRMHNCWHMFYEGC 186


>At2g43250.1 68415.m05375 expressed protein  and genefinder
          Length = 625

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 241 GKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDKIGASATAAHT 408
           G +NLF  + H     AF    +P+    P F + GA    + K  + A    A T
Sbjct: 460 GSLNLFLTHTHKAVTFAFTKVAVPSKAMAPGFASSGAKSTSLVKASLSAEKIRAVT 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,206
Number of Sequences: 28952
Number of extensions: 299818
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)