Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H07
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...   153   2e-38
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    91   1e-19
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   3.3  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   5.8  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score =  153 bits (371), Expect = 2e-38
 Identities = 71/190 (37%), Positives = 115/190 (60%), Gaps = 3/190 (1%)
 Frame = +1

Query: 1   FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
           +++ +   ++++TGDY+   DRHL  A +   RPD+LITESTY T     +  +E   L 
Sbjct: 190 YFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLN 249

Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYW-ERMNLK-YPVYFALGLTEKANNYYKM 354
            +H  +  GG+VL+PVFALGRAQEL ++L+ YW   ++L+  P+Y+A  L  K    ++ 
Sbjct: 250 IIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQT 309

Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
           ++   N  IRK F +RN F F+ +K   +    D+ G  V+ A+PGML  G+S  + ++W
Sbjct: 310 YVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERW 369

Query: 532 APHEQNMVIM 561
           AP  +N +++
Sbjct: 370 APDPRNTLLL 379


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 14/195 (7%)
 Frame = +1

Query: 19  SQSVVYTGDYNMTPDRHL-GAAWIDKC-------RPDLLITESTYATTIRDSKRCRERDF 174
           S+SV+Y  D+N + D+HL GAA            RP+ LIT++  +     S++ R+  F
Sbjct: 152 SESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAF 211

Query: 175 LKKVHECVEKGGKVLIPVFALGRAQELCILLETYWERMN--LKYPVYFALGLTEKANNYY 348
           ++ V   + KGG VL+PV A  R  ELC +L+ +W      L +P+ F    + K  +Y 
Sbjct: 212 IESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLPFPILFLSPTSTKTIDYA 271

Query: 349 KMFITWTNQKIRKTF-VQRNMFDFKHIKPF-DKSYIDN--PGAMVVFATPGMLHAGLSLN 516
           K  I W    I + F +  N+ +F++I    D S I +  PG  V+ AT   L  G S  
Sbjct: 272 KSMIEWMGDNIVRDFGINENLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFSQR 331

Query: 517 IFKKWAPHEQNMVIM 561
           I         N +I+
Sbjct: 332 ILLDLMSENSNDLIL 346


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 355 FITWTNQKIRKTFVQRNM-FDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
           F+     +IRK++ ++ +  D K    F KS  +   A V++ATP   H G  L  F +W
Sbjct: 65  FLYNKEDEIRKSYGEKKITIDLKGTSFFGKSPQE---AKVLYATPVDKHNGNDLQAFCEW 121


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +1

Query: 373 QKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAG 504
           + ++ T+V + ++  ++I+P   S++ N G M   A    +  G
Sbjct: 452 ENLKNTYVFKELYSVRNIRPSFHSFLGNYGGMAYSAVEAYVLKG 495


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 424 IKPFDKSYIDNPGAMVV 474
           + P DK Y DN GA VV
Sbjct: 75  VSPADKEYFDNGGASVV 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,824
Number of Sequences: 5004
Number of extensions: 47512
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)