Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H07
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 280 6e-76
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 152 2e-37
09_06_0344 - 22419152-22419250,22419460-22419554,22419952-224201... 102 2e-22
05_01_0565 - 4926137-4926847,4926928-4927257 32 0.27
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204... 30 1.5
05_05_0082 + 22252993-22255617 29 2.5
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233... 28 5.9
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 280 bits (686), Expect = 6e-76
Identities = 123/186 (66%), Positives = 151/186 (81%)
Frame = +1
Query: 4 WIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKK 183
+ +VG ++VYTGDYNMTPDRHLGAA ID+ + DLLITESTYA T+RDSK RER+FLK
Sbjct: 180 YAKVGDAAIVYTGDYNMTPDRHLGAAQIDRLKLDLLITESTYAKTVRDSKHAREREFLKA 239
Query: 184 VHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFIT 363
VH+CV GGKVLIP FALGRAQELCILL+ YWERMNLK P+YF+ GLT +AN YYKM I
Sbjct: 240 VHKCVSGGGKVLIPAFALGRAQELCILLDDYWERMNLKIPIYFSAGLTIQANMYYKMLIG 299
Query: 364 WTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHE 543
WT+QKI+ ++ N FDFKH+ F++S+I+NPG V+FATPGM+ G SL +FKKWAP E
Sbjct: 300 WTSQKIKNSYTVHNPFDFKHVCHFERSFINNPGPCVLFATPGMISGGFSLEVFKKWAPSE 359
Query: 544 QNMVIM 561
+N+V +
Sbjct: 360 KNLVTL 365
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 152 bits (368), Expect = 2e-37
Identities = 80/192 (41%), Positives = 111/192 (57%), Gaps = 5/192 (2%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F + + V+YTGDY+ DRHL AA + + PD+ I ESTY + RE+ F
Sbjct: 185 FMVDIAGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTD 244
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYW-ERMNL-KYPVYFALGLTEKANNYYKM 354
+H V +GG+VLIP FALGRAQEL ++L+ YW L K P+Y+A L +K Y+
Sbjct: 245 VIHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQT 304
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDN---PGAMVVFATPGMLHAGLSLNIFK 525
+I N++IR F Q N F FKHI+ + IDN G VV A+PG L +GLS +F
Sbjct: 305 YINSMNERIRNQFAQSNPFHFKHIESLNS--IDNFHDVGPSVVMASPGGLQSGLSRQLFD 362
Query: 526 KWAPHEQNMVIM 561
KW ++N ++
Sbjct: 363 KWCTDKKNSCVI 374
>09_06_0344 -
22419152-22419250,22419460-22419554,22419952-22420108,
22420825-22420869,22421080-22421211,22421496-22421594,
22421690-22421785,22421968-22422149,22422242-22422494,
22422867-22422974,22423037-22423094,22423462-22423613,
22423698-22423792,22424172-22424287,22424369-22424495,
22424565-22424661,22424745-22424913,22425879-22426027
Length = 742
Score = 102 bits (244), Expect = 2e-22
Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Frame = +1
Query: 22 QSVVYTGDYNMTPDRHL-GAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECV 198
+ VVY D+N +RHL G A RP +LIT++ A KR +++DF+ + + +
Sbjct: 167 EDVVYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVL 226
Query: 199 EKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQK 378
GG VL+P+ GR E+ ++LE YW + +L YP+YF ++ +Y K F+ W N
Sbjct: 227 TGGGSVLLPIDTAGRVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDS 286
Query: 379 IRKTF--VQRNMFDFKHI-KPFDKSYIDNPG--AMVVFATPGMLHAGLSLNIFKKWAPHE 543
I K+F + N F K + + +K ++ G VV A+ L G S +IF A
Sbjct: 287 ISKSFEHTRDNAFLLKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEA 346
Query: 544 QNMVI 558
+N+V+
Sbjct: 347 KNLVL 351
>05_01_0565 - 4926137-4926847,4926928-4927257
Length = 346
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 192 LVNFFKEISFPTPFRISYSCCISRFSYKQVRSAFINPGCSQVSIWCHIVVS 40
L N KEI R+S C+ + ++ RS F+N G + W H +S
Sbjct: 289 LWNMLKEIPLTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLS 339
>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
21420530-21420757,21420916-21421049,21421309-21421392,
21421554-21421760,21421871-21422203,21422343-21422449,
21422823-21422988,21423127-21423230,21423347-21423507,
21423595-21424495,21424642-21424732,21424837-21425127,
21425491-21425575,21425665-21425747,21427653-21427773,
21427785-21428260
Length = 1422
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 180 FKEISFPTPFRIS-YSCCISRFSYKQVRSAFINP 82
++++SFPT + + YS CI+ F +KQ RS + NP
Sbjct: 1131 YQDLSFPTKYSQNFYSQCIANF-WKQYRSYWKNP 1163
>05_05_0082 + 22252993-22255617
Length = 874
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 112 ITESTYATTIRDSKRCRERDFLKKVHECVEKGG 210
+T+STYAT I+ ++ +++H CV K G
Sbjct: 300 MTQSTYATVIKLCANLKQLALARQLHSCVLKHG 332
>12_01_1052 +
10821964-10822064,10822434-10822607,10823086-10823346,
10829833-10831798,10832114-10832515
Length = 967
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 304 VYFALGLTEKANNYYKMFITWTNQKIRKTFVQRNMFD 414
V ++L L + YY+ W QK+ K + MFD
Sbjct: 276 VLYSLALFQGVLFYYRAISAWEEQKLVKDVADKYMFD 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,771
Number of Sequences: 37544
Number of extensions: 277875
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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