Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H07
(562 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 355 5e-98
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 355 5e-98
BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein. 355 5e-98
AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and polyadenyl... 355 5e-98
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 355 5e-98
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 355 5e-98
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 354 1e-97
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 354 1e-97
BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein. 345 6e-95
AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and polyadeny... 297 1e-80
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 187 2e-47
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 187 2e-47
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 187 2e-47
AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens ... 169 8e-42
BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein. 159 8e-39
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 159 8e-39
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 159 8e-39
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 159 8e-39
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 159 8e-39
AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of cleav... 159 8e-39
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 159 8e-39
AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and polyadeny... 111 2e-24
AK000549-1|BAA91246.1| 292|Homo sapiens protein ( Homo sapiens ... 91 2e-18
BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and polyadenyl... 81 2e-15
U96629-1|AAB67601.1| 409|Homo sapiens unknown protein CIT987SK_... 31 2.8
BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subu... 31 2.8
AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens ... 31 3.7
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 355 bits (874), Expect = 5e-98
Identities = 160/187 (85%), Positives = 176/187 (94%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLK
Sbjct: 164 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLK 223
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFI 360
KVHE VE+GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI
Sbjct: 224 KVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFI 283
Query: 361 TWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPH 540
WTNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +
Sbjct: 284 PWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGN 343
Query: 541 EQNMVIM 561
E+NMVIM
Sbjct: 344 EKNMVIM 350
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 355 bits (874), Expect = 5e-98
Identities = 160/187 (85%), Positives = 176/187 (94%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLK
Sbjct: 164 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLK 223
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFI 360
KVHE VE+GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI
Sbjct: 224 KVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFI 283
Query: 361 TWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPH 540
WTNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +
Sbjct: 284 PWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGN 343
Query: 541 EQNMVIM 561
E+NMVIM
Sbjct: 344 EKNMVIM 350
>BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein.
Length = 473
Score = 355 bits (874), Expect = 5e-98
Identities = 160/187 (85%), Positives = 176/187 (94%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLK
Sbjct: 37 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLK 96
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFI 360
KVHE VE+GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI
Sbjct: 97 KVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFI 156
Query: 361 TWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPH 540
WTNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +
Sbjct: 157 PWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGN 216
Query: 541 EQNMVIM 561
E+NMVIM
Sbjct: 217 EKNMVIM 223
>AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 523
Score = 355 bits (874), Expect = 5e-98
Identities = 160/187 (85%), Positives = 176/187 (94%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLK
Sbjct: 87 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLK 146
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFI 360
KVHE VE+GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI
Sbjct: 147 KVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFI 206
Query: 361 TWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPH 540
WTNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +
Sbjct: 207 PWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGN 266
Query: 541 EQNMVIM 561
E+NMVIM
Sbjct: 267 EKNMVIM 273
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 355 bits (874), Expect = 5e-98
Identities = 160/187 (85%), Positives = 176/187 (94%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLK
Sbjct: 78 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLK 137
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFI 360
KVHE VE+GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI
Sbjct: 138 KVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFI 197
Query: 361 TWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPH 540
WTNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +
Sbjct: 198 PWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGN 257
Query: 541 EQNMVIM 561
E+NMVIM
Sbjct: 258 EKNMVIM 264
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 355 bits (874), Expect = 5e-98
Identities = 160/187 (85%), Positives = 176/187 (94%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLK
Sbjct: 191 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLK 250
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFI 360
KVHE VE+GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI
Sbjct: 251 KVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFI 310
Query: 361 TWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPH 540
WTNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +
Sbjct: 311 PWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGN 370
Query: 541 EQNMVIM 561
E+NMVIM
Sbjct: 371 EKNMVIM 377
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 354 bits (870), Expect = 1e-97
Identities = 159/185 (85%), Positives = 175/185 (94%)
Frame = +1
Query: 7 IRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKV 186
I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLKKV
Sbjct: 164 IKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKV 223
Query: 187 HECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITW 366
HE VE+GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI W
Sbjct: 224 HETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW 283
Query: 367 TNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHEQ 546
TNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +E+
Sbjct: 284 TNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEK 343
Query: 547 NMVIM 561
NMVIM
Sbjct: 344 NMVIM 348
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 354 bits (870), Expect = 1e-97
Identities = 159/187 (85%), Positives = 176/187 (94%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLK
Sbjct: 63 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLK 122
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFI 360
KVHE VE+GGKVLIPVFALGRAQELCILL+T+WERMNLK P+YF+ GLTEKAN+YYK+FI
Sbjct: 123 KVHETVERGGKVLIPVFALGRAQELCILLKTFWERMNLKVPIYFSTGLTEKANHYYKLFI 182
Query: 361 TWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPH 540
WTNQKIRKTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +
Sbjct: 183 PWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGN 242
Query: 541 EQNMVIM 561
E+NMVIM
Sbjct: 243 EKNMVIM 249
>BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein.
Length = 429
Score = 345 bits (848), Expect = 6e-95
Identities = 155/179 (86%), Positives = 169/179 (94%)
Frame = +1
Query: 25 SVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVEK 204
SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLKKVHE VE+
Sbjct: 1 SVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVER 60
Query: 205 GGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIR 384
GGKVLIPVFALGRAQELCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI WTNQKIR
Sbjct: 61 GGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIR 120
Query: 385 KTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHEQNMVIM 561
KTFVQRNMF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +E+NMVIM
Sbjct: 121 KTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 179
>AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 379
Score = 297 bits (730), Expect = 1e-80
Identities = 133/154 (86%), Positives = 145/154 (94%)
Frame = +1
Query: 73 GAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVEKGGKVLIPVFALGRAQE 252
GAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLKKVHE VE+GGKVLIPVFALGRAQE
Sbjct: 225 GAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQE 284
Query: 253 LCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIRKTFVQRNMFDFKHIKP 432
LCILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI WTNQKIRKTFVQRNMF+FKHIK
Sbjct: 285 LCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 344
Query: 433 FDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWA 534
FD+++ DNPG MVVFATPGMLHAG SL IF+KWA
Sbjct: 345 FDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWA 378
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 187 bits (456), Expect = 2e-47
Identities = 81/102 (79%), Positives = 93/102 (91%)
Frame = +1
Query: 256 CILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIRKTFVQRNMFDFKHIKPF 435
CILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI WTNQKIRKTFVQRNMF+FKHIK F
Sbjct: 129 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 188
Query: 436 DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHEQNMVIM 561
D+++ DNPG MVVFATPGMLHAG SL IF+KWA +E+NMVIM
Sbjct: 189 DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 230
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 187 bits (456), Expect = 2e-47
Identities = 81/102 (79%), Positives = 93/102 (91%)
Frame = +1
Query: 256 CILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIRKTFVQRNMFDFKHIKPF 435
CILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI WTNQKIRKTFVQRNMF+FKHIK F
Sbjct: 129 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 188
Query: 436 DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHEQNMVIM 561
D+++ DNPG MVVFATPGMLHAG SL IF+KWA +E+NMVIM
Sbjct: 189 DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 230
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 187 bits (456), Expect = 2e-47
Identities = 81/102 (79%), Positives = 93/102 (91%)
Frame = +1
Query: 256 CILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIRKTFVQRNMFDFKHIKPF 435
CILLET+WERMNLK P+YF+ GLTEKAN+YYK+FI WTNQKIRKTFVQRNMF+FKHIK F
Sbjct: 141 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 200
Query: 436 DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHEQNMVIM 561
D+++ DNPG MVVFATPGMLHAG SL IF+KWA +E+NMVIM
Sbjct: 201 DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 242
>AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ13294 fis, clone OVARC1001232, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 278
Score = 169 bits (410), Expect = 8e-42
Identities = 77/82 (93%), Positives = 81/82 (98%)
Frame = +1
Query: 7 IRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKV 186
I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRERDFLKKV
Sbjct: 144 IKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKV 203
Query: 187 HECVEKGGKVLIPVFALGRAQE 252
HE VE+GGKVLIPVFALGRAQE
Sbjct: 204 HETVERGGKVLIPVFALGRAQE 225
Score = 35.1 bits (77), Expect = 0.17
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 270 NILGENEPKIPSLLCSWPNRKS*QLLQNVYHMD*SKDKKDFCAKKHV 410
++LG +EP+ LL +R+ LLQ V+ +D +D +DF A++HV
Sbjct: 232 DLLGAHEPEGAHLLLHGADREGQPLLQAVHPLDQPEDPQDFRAEEHV 278
>BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein.
Length = 554
Score = 159 bits (385), Expect = 8e-39
Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 165 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCN 224
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKY--PVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIPVFALGRAQEL ++L+ YW+ + P+Y+A L +K Y+
Sbjct: 225 TVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQT 284
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
++ N KIRK N F FKHI + D+ G VV A+PGM+ +GLS +F+ W
Sbjct: 285 YVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 532 APHEQNMVIM 561
++N VI+
Sbjct: 345 CTDKRNGVII 354
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 159 bits (385), Expect = 8e-39
Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 165 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCN 224
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKY--PVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIPVFALGRAQEL ++L+ YW+ + P+Y+A L +K Y+
Sbjct: 225 TVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQT 284
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
++ N KIRK N F FKHI + D+ G VV A+PGM+ +GLS +F+ W
Sbjct: 285 YVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 532 APHEQNMVIM 561
++N VI+
Sbjct: 345 CTDKRNGVII 354
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 159 bits (385), Expect = 8e-39
Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 165 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCN 224
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKY--PVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIPVFALGRAQEL ++L+ YW+ + P+Y+A L +K Y+
Sbjct: 225 TVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQT 284
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
++ N KIRK N F FKHI + D+ G VV A+PGM+ +GLS +F+ W
Sbjct: 285 YVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 532 APHEQNMVIM 561
++N VI+
Sbjct: 345 CTDKRNGVII 354
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 159 bits (385), Expect = 8e-39
Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 165 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCN 224
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKY--PVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIPVFALGRAQEL ++L+ YW+ + P+Y+A L +K Y+
Sbjct: 225 TVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQT 284
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
++ N KIRK N F FKHI + D+ G VV A+PGM+ +GLS +F+ W
Sbjct: 285 YVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 532 APHEQNMVIM 561
++N VI+
Sbjct: 345 CTDKRNGVII 354
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 159 bits (385), Expect = 8e-39
Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 165 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCN 224
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKY--PVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIPVFALGRAQEL ++L+ YW+ + P+Y+A L +K Y+
Sbjct: 225 TVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQT 284
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
++ N KIRK N F FKHI + D+ G VV A+PGM+ +GLS +F+ W
Sbjct: 285 YVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 532 APHEQNMVIM 561
++N VI+
Sbjct: 345 CTDKRNGVII 354
>AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of cleavage
and polyadenylation specificity factor protein.
Length = 379
Score = 159 bits (385), Expect = 8e-39
Identities = 80/190 (42%), Positives = 112/190 (58%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 46 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCN 105
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMN--LKYPVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIPVFALGRAQEL ++L+ YW+ P+Y+A L +K Y+
Sbjct: 106 TVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELXDXPIYYASSLAKKCMAVYQT 165
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
++ N KIRK N F FKHI + D+ G VV A+PGM+ +GLS +F+ W
Sbjct: 166 YVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 225
Query: 532 APHEQNMVIM 561
++N VI+
Sbjct: 226 CTDKRNGVII 235
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 159 bits (385), Expect = 8e-39
Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + ++YTGD++ DRHL AA I +PD+LI ESTY T I + + RE F
Sbjct: 165 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCN 224
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKY--PVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIPVFALGRAQEL ++L+ YW+ + P+Y+A L +K Y+
Sbjct: 225 TVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQT 284
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
++ N KIRK N F FKHI + D+ G VV A+PGM+ +GLS +F+ W
Sbjct: 285 YVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
Query: 532 APHEQNMVIM 561
++N VI+
Sbjct: 345 CTDKRNGVII 354
>AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 283
Score = 111 bits (267), Expect = 2e-24
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRC 159
F I+VGS+SVVYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRC
Sbjct: 231 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRC 283
>AK000549-1|BAA91246.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ20542 fis, clone KAT11395. ).
Length = 292
Score = 91.1 bits (216), Expect = 2e-18
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1
Query: 406 MFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHEQNMVIM 561
MF+FKHIK FD+++ DNPG MVVFATPGMLHAG SL IF+KWA +E+NMVIM
Sbjct: 1 MFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 52
>BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and
polyadenylation specific factor 2, 100kDa protein.
Length = 782
Score = 81.4 bits (192), Expect = 2e-15
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Frame = +1
Query: 7 IRVGSQSVVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKK 183
++ G + +VY D+N + HL ++ RP LLIT+S AT ++ ++ R+ L
Sbjct: 163 VKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTN 222
Query: 184 VHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANN---YYKM 354
V E + G VLI V GR EL LL+ W + VY L + N + K
Sbjct: 223 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 282
Query: 355 FITWTNQKIRKTFVQR--NMFDFKHIKPFD--KSYIDNPGAMVVFATPGMLHAGLSLNIF 522
+ W + K+ + F + N F F+H+ P VV A+ L G S ++F
Sbjct: 283 QVEWMSGKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLF 342
Query: 523 KKWAPHEQNMVIM 561
+W +N +I+
Sbjct: 343 IQWCQDPKNSIIL 355
>U96629-1|AAB67601.1| 409|Homo sapiens unknown protein
CIT987SK_2A8_1 protein.
Length = 409
Score = 31.1 bits (67), Expect = 2.8
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 169 DFLKKVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNL-KYPVYFALGLTEKANNY 345
+F + V GG VL+P + G +L L Y + L P+YF + + +
Sbjct: 31 EFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSVPLYFISPVANSSLEF 90
Query: 346 YKMFITW 366
++F W
Sbjct: 91 SQIFAEW 97
>BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subunit
9 protein.
Length = 658
Score = 31.1 bits (67), Expect = 2.8
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 169 DFLKKVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNL-KYPVYFALGLTEKANNY 345
+F + V GG VL+P + G +L L Y + L P+YF + + +
Sbjct: 280 EFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSVPLYFISPVANSSLEF 339
Query: 346 YKMFITW 366
++F W
Sbjct: 340 SQIFAEW 346
>AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens
cDNA FLJ10871 fis, clone NT2RP4001696, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 658
Score = 30.7 bits (66), Expect = 3.7
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 169 DFLKKVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNL-KYPVYFALGLTEKANNY 345
+F + V GG VL+P + G +L L Y + L P+YF + + +
Sbjct: 280 EFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSAPLYFISPVANSSLEF 339
Query: 346 YKMFITW 366
++F W
Sbjct: 340 SQIFAEW 346
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,960,934
Number of Sequences: 237096
Number of extensions: 1638037
Number of successful extensions: 2964
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2949
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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