Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H07
(562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-7|CAB54223.2| 608|Caenorhabditis elegans Hypothetical pr... 293 7e-80
AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical ... 157 7e-39
AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical ... 66 1e-11
AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi... 31 0.57
AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna ... 31 0.57
Z72505-7|CAA96614.1| 333|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z70780-16|CAA94829.1| 333|Caenorhabditis elegans Hypothetical p... 28 4.0
Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical pr... 27 7.0
AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein. 27 7.0
>Z48334-7|CAB54223.2| 608|Caenorhabditis elegans Hypothetical
protein F10B5.8 protein.
Length = 608
Score = 293 bits (718), Expect = 7e-80
Identities = 132/188 (70%), Positives = 155/188 (82%), Gaps = 1/188 (0%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWI-DKCRPDLLITESTYATTIRDSKRCRERDFL 177
F IR+G SV+YTGDYNMTPDRHLGAA + RP +LI+ESTYATTIRDSKR RERDFL
Sbjct: 168 FEIRLGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFL 227
Query: 178 KKVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMF 357
+KVHECV KGGKV+IPVFALGRAQELCILLE+YWERM L P+YF+ GL E+AN YY++F
Sbjct: 228 RKVHECVMKGGKVIIPVFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLF 287
Query: 358 ITWTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAP 537
I+WTN+ I+KTFV+RNMF+FKHIKP +K D PG V+F+TPGMLH G SL +FKKW
Sbjct: 288 ISWTNENIKKTFVERNMFEFKHIKPMEKGCEDQPGPQVLFSTPGMLHGGQSLKVFKKWCS 347
Query: 538 HEQNMVIM 561
NM+IM
Sbjct: 348 DPLNMIIM 355
>AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical
protein Y67H2A.1 protein.
Length = 707
Score = 157 bits (380), Expect = 7e-39
Identities = 77/190 (40%), Positives = 110/190 (57%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F I + V+YTGD++ DRHL AA I P +LITESTY T + + RE+ F +
Sbjct: 166 FMIEIAGVRVLYTGDFSCLEDRHLCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQ 225
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKY--PVYFALGLTEKANNYYKM 354
VH+ V +GG+ LIP FA+G AQEL ++L+ YWE + PVY+A L +K + Y+
Sbjct: 226 MVHDIVTRGGRCLIPAFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQT 285
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPF-DKSYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
F+ N +I+K +N F FKH+ ++ G VV ATPGML +G S +F+ W
Sbjct: 286 FVNGMNSRIQKQIAVKNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESW 345
Query: 532 APHEQNMVIM 561
P +N I+
Sbjct: 346 CPDTKNGCII 355
>AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical
protein F09G2.4 protein.
Length = 843
Score = 66.5 bits (155), Expect = 1e-11
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 9/193 (4%)
Frame = +1
Query: 10 RVGSQSVVYTGDYNMTPDRHLGAAWIDKC-RPDLLITESTYATTIRDSKRCRERDFLKKV 186
RV + +VY D+N +RHL D RP LLIT + + + + ++ R+ + K+
Sbjct: 163 RVTGEDIVYCVDFNHKKERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKI 222
Query: 187 HECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANN---YYKMF 357
V + G +I + GR EL LL+ W + Y + ++ A++ + K
Sbjct: 223 LRTVRQKGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQ 282
Query: 358 ITWTNQKIRK---TFVQRNMFDFKHIK--PFDKSYIDNPGAMVVFATPGMLHAGLSLNIF 522
+ W N+K+ K + + N F KH+ + + VV + + +G S +F
Sbjct: 283 LEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELF 342
Query: 523 KKWAPHEQNMVIM 561
W +N VI+
Sbjct: 343 LDWCSDPRNGVIL 355
>AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi
enabling proteinSID-1 protein.
Length = 776
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 382 RKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVF-ATPGMLHAGLSLNIFK---KWAPHEQN 549
RK+F ++ F+ K ++SY M++F TP +L + +NI K K AP + N
Sbjct: 293 RKSFNEKKKISFEFKKLENQSYAVPTALMMIFLTTPCLLFLPIVINIIKNSRKLAPSQSN 352
Query: 550 MV 555
++
Sbjct: 353 LI 354
>AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna
interference defectiveprotein 1 protein.
Length = 776
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 382 RKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVF-ATPGMLHAGLSLNIFK---KWAPHEQN 549
RK+F ++ F+ K ++SY M++F TP +L + +NI K K AP + N
Sbjct: 293 RKSFNEKKKISFEFKKLENQSYAVPTALMMIFLTTPCLLFLPIVINIIKNSRKLAPSQSN 352
Query: 550 MV 555
++
Sbjct: 353 LI 354
>Z72505-7|CAA96614.1| 333|Caenorhabditis elegans Hypothetical
protein C50C10.1 protein.
Length = 333
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +2
Query: 185 FTSVWXXXXXXXXXXXHWVELRSCVFYLKH 274
F +++ W+ ++ C+FYLKH
Sbjct: 24 FLTIFAAVTAIYGIFSFWITVKMCIFYLKH 53
>Z70780-16|CAA94829.1| 333|Caenorhabditis elegans Hypothetical
protein C50C10.1 protein.
Length = 333
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +2
Query: 185 FTSVWXXXXXXXXXXXHWVELRSCVFYLKH 274
F +++ W+ ++ C+FYLKH
Sbjct: 24 FLTIFAAVTAIYGIFSFWITVKMCIFYLKH 53
>Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical
protein ZC518.3c protein.
Length = 597
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 334 LFLLGQEQSKLGILGSFSPSMFQ----VKYTTPELYPMQIQVLVLYHLFPHTRE 185
+F Q ++LGILG F P Q + + P + I ++ Y + P T +
Sbjct: 512 IFATPQSLARLGILGPFDPQWVQSNKILGFPHPHVASDHIPIMAQYAIIPTTHQ 565
>Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical
protein ZC518.3b protein.
Length = 613
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 334 LFLLGQEQSKLGILGSFSPSMFQ----VKYTTPELYPMQIQVLVLYHLFPHTRE 185
+F Q ++LGILG F P Q + + P + I ++ Y + P T +
Sbjct: 528 IFATPQSLARLGILGPFDPQWVQSNKILGFPHPHVASDHIPIMAQYAIIPTTHQ 581
>Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical
protein ZC518.3a protein.
Length = 606
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 334 LFLLGQEQSKLGILGSFSPSMFQ----VKYTTPELYPMQIQVLVLYHLFPHTRE 185
+F Q ++LGILG F P Q + + P + I ++ Y + P T +
Sbjct: 521 IFATPQSLARLGILGPFDPQWVQSNKILGFPHPHVASDHIPIMAQYAIIPTTHQ 574
>AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein.
Length = 606
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 334 LFLLGQEQSKLGILGSFSPSMFQ----VKYTTPELYPMQIQVLVLYHLFPHTRE 185
+F Q ++LGILG F P Q + + P + I ++ Y + P T +
Sbjct: 521 IFATPQSLARLGILGPFDPQWVQSNKILGFPHPHVASDHIPIMAQYAIIPTTHQ 574
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,744
Number of Sequences: 27780
Number of extensions: 268322
Number of successful extensions: 621
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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