Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H07
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s... 252 9e-68
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit... 149 1e-36
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit... 149 1e-36
At5g23880.1 68418.m02805 cleavage and polyadenylation specificit... 115 2e-26
At3g07530.1 68416.m00899 expressed protein ; expression supporte... 32 0.23
At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domai... 31 0.70
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 29 2.1
At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR) domai... 28 3.7
At1g56310.1 68414.m06473 3'-5' exonuclease domain-containing pro... 27 6.5
At5g58080.1 68418.m07268 two-component responsive regulator fami... 27 8.6
At5g06970.1 68418.m00789 expressed protein 27 8.6
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR... 27 8.6
At2g40320.1 68415.m04970 expressed protein and genefinder 27 8.6
>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
simliar to SP|P79101 Cleavage and polyadenylation
specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
{Bos taurus}; contains Pfam profile PF00753:
Metallo-beta-lactamase superfamily
Length = 613
Score = 252 bits (618), Expect = 9e-68
Identities = 115/186 (61%), Positives = 144/186 (77%)
Frame = +1
Query: 4 WIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKK 183
+ ++G ++VYTGDYNMT DRHLGAA ID+ + DLLI+ESTYATTIR SK RER+FL+
Sbjct: 164 YAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQA 223
Query: 184 VHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFIT 363
VH+CV GGK LIP FALGRAQELC+LL+ YWERMN+K P+YF+ GLT +AN YYKM I+
Sbjct: 224 VHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLIS 283
Query: 364 WTNQKIRKTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPHE 543
WT+Q +++ N FDFK++K FD+S I PG V+FATPGML AG SL +FK WAP
Sbjct: 284 WTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSP 343
Query: 544 QNMVIM 561
N+V +
Sbjct: 344 LNLVAL 349
>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 149 bits (361), Expect = 1e-36
Identities = 76/190 (40%), Positives = 108/190 (56%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F + + ++YTGDY+ DRHL AA + + PD+ I EST + S+ RE+ F
Sbjct: 175 FMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTD 234
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYW-ERMNL-KYPVYFALGLTEKANNYYKM 354
+H V +GG+VLIP FALGRAQEL ++L+ YW +L P+Y+A L +K Y+
Sbjct: 235 VIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQT 294
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPFDK-SYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
+I N +IR F N F FKHI P + ++ G VV ATPG L +GLS +F W
Sbjct: 295 YILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSW 354
Query: 532 APHEQNMVIM 561
++N I+
Sbjct: 355 CSDKKNACII 364
>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 149 bits (361), Expect = 1e-36
Identities = 76/190 (40%), Positives = 108/190 (56%), Gaps = 3/190 (1%)
Frame = +1
Query: 1 FWIRVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLK 180
F + + ++YTGDY+ DRHL AA + + PD+ I EST + S+ RE+ F
Sbjct: 175 FMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTD 234
Query: 181 KVHECVEKGGKVLIPVFALGRAQELCILLETYW-ERMNL-KYPVYFALGLTEKANNYYKM 354
+H V +GG+VLIP FALGRAQEL ++L+ YW +L P+Y+A L +K Y+
Sbjct: 235 VIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQT 294
Query: 355 FITWTNQKIRKTFVQRNMFDFKHIKPFDK-SYIDNPGAMVVFATPGMLHAGLSLNIFKKW 531
+I N +IR F N F FKHI P + ++ G VV ATPG L +GLS +F W
Sbjct: 295 YILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSW 354
Query: 532 APHEQNMVIM 561
++N I+
Sbjct: 355 CSDKKNACII 364
>At5g23880.1 68418.m02805 cleavage and polyadenylation specificity
factor identical to cleavage and polyadenylation
specificity factor [Arabidopsis thaliana]
SWISS-PROT:Q9LKF9
Length = 739
Score = 115 bits (277), Expect = 2e-26
Identities = 62/186 (33%), Positives = 105/186 (56%), Gaps = 7/186 (3%)
Frame = +1
Query: 22 QSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYAT-TIRDSKRCRERDFLKKVHEC 195
+ V+Y DYN +RHL + RP +LIT++ +A T + +++ R+++FL + +
Sbjct: 167 EDVIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKH 226
Query: 196 VEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQ 375
+E GG VL+PV GR EL ++LE +W + +P+YF ++ +Y K F+ W +
Sbjct: 227 LEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSD 286
Query: 376 KIRKTF--VQRNMFDFKHIK-PFDKSYIDN--PGAMVVFATPGMLHAGLSLNIFKKWAPH 540
I K+F + N F +H+ +K+ +DN PG VV A+ L AG + IF +WA
Sbjct: 287 SISKSFETSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWAND 346
Query: 541 EQNMVI 558
+N+V+
Sbjct: 347 PRNLVL 352
>At3g07530.1 68416.m00899 expressed protein ; expression supported
by MPSS
Length = 699
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = +1
Query: 190 ECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWT 369
E + GG LI + +G +L LL E +LK P++ + E+ Y W
Sbjct: 339 ESADAGGSTLITITRIGIVLQLLELLSNSLESSSLKVPIFVISSVAEELLAYTNTIPEWL 398
Query: 370 NQKIRKTFVQRNMFDFKHIK 429
++ ++ + F H+K
Sbjct: 399 CEQRQEKLISGEP-SFGHLK 417
>At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 682
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 527 FLNMFRDSPACNIPGVAKTTIAPGLSI*DLSNGLIC 420
FL F+D P IPGV K P + + + +G+ C
Sbjct: 328 FLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRC 363
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 112 ITESTYATTIRDSKRCRERDFLKKVHECVEKGGKVLIPVFALGRAQEL 255
I + ++ +SK C L K+ EC++KG ++IP+F +A E+
Sbjct: 73 IALAIFSVRYTESKWCLNE--LVKMKECMDKGKLLIIPIFYKVKAYEV 118
>At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 363
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 106 LLITESTYATTIRDSKRCRER---DFLKKVHECVEKGGKVLIPVFALGRAQEL 255
L I ES A I S+ R D + K+ ECV++ ++IP+F RA+++
Sbjct: 61 LRIKESKVALVIFSSRFAESRFCMDEIVKMKECVDERKLLVIPIFYKVRARDV 113
>At1g56310.1 68414.m06473 3'-5' exonuclease domain-containing
protein contains Pfam profile PF01612: 3'-5' exonuclease
Length = 582
Score = 27.5 bits (58), Expect = 6.5
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Frame = +1
Query: 148 SKRCRERDFLKKVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVYFAL--G 321
+K + DF + H+C E KVL A+ ++T +R LKY VY A+ G
Sbjct: 262 NKNYLQHDFPELYHKCKESALKVLAEKACWDVAE-----IKTKGDRQLLKYLVYLAVEAG 316
Query: 322 LTEKANNYYKMFITWTNQKIRK---TFVQRNMFDFKHIKPFDKSYID 453
EK + + K R+ FV+++ + D ++D
Sbjct: 317 YLEKVDELCDRYSLQGLPKAREAEVAFVEKSFLRLNDLAVEDVVWVD 363
>At5g58080.1 68418.m07268 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 581
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 22 QSVVYTGDYNMTPDRHLGAAWIDKCRP 102
+S Y GD+ DR +G +++D C P
Sbjct: 315 RSKSYIGDFKGLGDRAIGGSFLDTCMP 341
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 385 KTFVQRNMFDFKHIKPFDKSYIDNPGAMVVFATPGMLHAGLS 510
K FV++ +FD KH+ ID P ++ LH +S
Sbjct: 817 KVFVKKELFDSKHLDERRSINIDVPATAMLCVQLNTLHYAVS 858
>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1147
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 175 LKKVHECVEKGGKVLIPVF 231
L ++H+C +KG +++IPVF
Sbjct: 87 LVEIHKCYKKGEQMVIPVF 105
>At2g40320.1 68415.m04970 expressed protein and genefinder
Length = 425
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 163 ERDFLKKVHECVEKGGKVLIPVFALGRAQELCILLETYWERMNLKYPVY 309
E +F+ EK K FA+G+ +E C + W R + P+Y
Sbjct: 50 EPNFVLPPSRTPEKNKKSEKLAFAIGKTEESCDVFSGKWVRDEVSRPLY 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,199
Number of Sequences: 28952
Number of extensions: 241651
Number of successful extensions: 578
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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