Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H06
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128...    31   0.64 
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657...    31   0.64 
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778...    29   2.6  
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307...    29   3.4  
10_06_0037 + 9932967-9933112,9934815-9934822,9935213-9935349,993...    28   5.9  
08_02_1622 - 28309472-28309871,28310362-28310399                       28   5.9  
04_04_1542 - 34264994-34265331,34266195-34267029                       28   7.8  
01_06_0829 - 32270189-32270863                                         28   7.8  
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498...    28   7.8  

>05_05_0132 -
           22611030-22611908,22612016-22612135,22612644-22612856,
           22612968-22613288,22613421-22613504
          Length = 538

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 309 RKPHHHHTPSPQAKP 353
           ++PHHHH P PQA P
Sbjct: 59  QQPHHHHPPPPQAAP 73


>02_05_1213 -
           34963971-34964658,34965030-34965270,34965347-34965736,
           34966515-34966781,34966881-34967249,34967931-34968014,
           34968113-34968226,34969952-34970018
          Length = 739

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 291 PRIRLHRKPHHHHTPSPQAKPQ 356
           P  + HR+P+H H+PSP   PQ
Sbjct: 67  PSHKHHRRPYHPHSPSPSPLPQ 88


>05_03_0468 +
           14376926-14377183,14377534-14377710,14377802-14377867,
           14378009-14378134,14378499-14378678,14379015-14379179,
           14380185-14380538
          Length = 441

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 318 HHHHTPS--PQAKPQ*SLVIQFK*LSRAWHR 404
           HHHHTPS  P + PQ SL  Q    S A HR
Sbjct: 20  HHHHTPSVGPSSPPQDSLAAQAMRASAA-HR 49


>05_05_0203 -
           23229538-23229720,23229808-23230007,23230087-23230718,
           23231493-23231844,23231926-23232136,23232413-23232472
          Length = 545

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 226 CHNRCRIQEHCNNDLSSNAGVLLYL 152
           CH+ CRIQEH +   +  A    YL
Sbjct: 10  CHHNCRIQEHADEGTNEAAHTTKYL 34


>10_06_0037 +
           9932967-9933112,9934815-9934822,9935213-9935349,
           9935761-9936438
          Length = 322

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 340 GDGVWWW*GLRWSRMRGYHAHTDLRW 263
           GDG+WWW   +     G+ +    RW
Sbjct: 8   GDGLWWWLKEKGKEKNGFISPRQSRW 33


>08_02_1622 - 28309472-28309871,28310362-28310399
          Length = 145

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 352 GFAWGDGVWWW*GLRWSRMRG 290
           G  W  GVWWW   RW   RG
Sbjct: 33  GGKWRQGVWWW---RWRGGRG 50


>04_04_1542 - 34264994-34265331,34266195-34267029
          Length = 390

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 306 HRKPHHHHTPSPQAKP 353
           H   HHHH P PQ  P
Sbjct: 245 HHHGHHHHPPPPQPPP 260


>01_06_0829 - 32270189-32270863
          Length = 224

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 199 VPVYDSGCDSSDPRRCQCA*SAT*DLYEHDTPASGSTASLTTTIHHHPKQSHSEAW 366
           VP+Y  G  S+DPR    A      +     PA    A+ +   HHH    H + W
Sbjct: 77  VPLYGRGKASTDPRSRSVA-----GVQIPSRPAGQRPATASQPDHHHDHLPHHDPW 127


>01_05_0282 -
           20347915-20348874,20348968-20349012,20349568-20349816,
           20350393-20350581,20351051-20351155,20351165-20351488,
           20351493-20351555
          Length = 644

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 310 RWSRMRGYHAHTDLRWH 260
           +W  + GYH  T L+WH
Sbjct: 51  KWCSLEGYHGITRLKWH 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,452
Number of Sequences: 37544
Number of extensions: 407500
Number of successful extensions: 1250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)