Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H06
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    32   0.49 
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)            30   2.0  
SB_15071| Best HMM Match : XAP5 (HMM E-Value=3.3)                      30   2.0  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  29   2.6  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   29   2.6  
SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    29   3.4  
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                29   4.5  
SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.0  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   6.0  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)                      28   7.9  

>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +1

Query: 97  YYSVHTFTLYTGYYTRPTEGKAGHLRYSRDHYYNVPVYDSGCDSSDP--RRCQCA*SAT* 270
           Y+    F   + +YT+    K GH RY+R  YY +  Y+     ++   +RC        
Sbjct: 545 YFKDKQFKQASVFYTKAINLKYGHFRYAR-AYYELGYYEKAVAVNEHALKRCSETRELLH 603

Query: 271 DLYEHDTPASGSTASLTTTIHHHPKQSHS 357
              E     +G+TA + ++ H   +  H+
Sbjct: 604 QADEFAKAIAGATAVMCSSSHQSSQDRHT 632


>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
          Length = 953

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420 TSTSRLVKGTRSSASGPSIRT--TQWDNLQTAANKATP 527
           TS+S+ +   RSS SGPS  T   + +NL+T++   TP
Sbjct: 828 TSSSKSISSKRSSDSGPSAYTLRVRRENLRTSSLSVTP 865


>SB_15071| Best HMM Match : XAP5 (HMM E-Value=3.3)
          Length = 412

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 376 SSDYQEHGTV-RKNEKHLPPGSSRGQDRRQVDHQFERPSGTTCRLRRTRQHRDSQRAPP 549
           SS    H TV R+ ++H P GS   +    V +Q+  P G   R + T Q+   +  PP
Sbjct: 322 SSTEHFHNTVPRREDEHQPAGSDGRKAEEGVANQYGNPHGHGLR-QETDQNTGRESPPP 379


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420  TSTSRLVKGTRSSASGPSIRTTQ--WDNLQTAANKATP 527
            TS+S+ +   RSS SGPS  T +   +NL+T++   TP
Sbjct: 904  TSSSKSISSKRSSDSGPSAYTLRVVRENLRTSSLSVTP 941



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420  TSTSRLVKGTRSSASGPSIRTTQ--WDNLQTAANKATP 527
            TS+S+ +   RSS SGPS  T +   +NL+T++   TP
Sbjct: 1758 TSSSKSISSKRSSDSGPSAYTLRVVRENLRTSSLLVTP 1795


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 415 HFYVRCHALDNHLN*ITRLHCGFAWGDGVWWW*GLRWSRMRGYHAHTDL--RWHFKRIDS 242
           HF  +  +L N L+ IT  +CG A G+  W W     +R + YH   DL  R H   + S
Sbjct: 649 HFRAKDQSL-NRLHYITSTNCGLAQGNMTWCW----ENRGKEYHWIKDLYTRLHLPVLPS 703

Query: 241 DE 236
            E
Sbjct: 704 IE 705


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420 TSTSRLVKGTRSSASGPSIRTTQ--WDNLQTAANKATP 527
           TS+S+ +   RSS SGPS  T +   +NL+T++   TP
Sbjct: 629 TSSSKSISSKRSSDSGPSAYTLRVVRENLRTSSLSVTP 666


>SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 273

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 300 RLHRKPHHHHTPSPQAK 350
           RLH KPHHHH  S  A+
Sbjct: 27  RLHTKPHHHHHMSVTAE 43


>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 340 PKQSHSEAW*FNSSDYQEHGTVRKNEKHLPPGSS-RGQDRRQVDHQFERPSGTTCRLRRT 516
           P+Q+  +       D+ +  T  +   H       + QD+++ D Q  RP   +C+ + +
Sbjct: 762 PRQASRKTKTSKPQDHGKQATRPRQASHKTRTKKPQDQDKQEQDKQAARPRHASCKTKAS 821

Query: 517 R-QHRDSQRAPP 549
           + Q +D+Q A P
Sbjct: 822 KLQDQDNQAARP 833


>SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
 Frame = +1

Query: 310 ASLTTTIHHHPKQSHSEAW*F------NSSDYQEHGTVRKNEKHLPPGSSRGQDRRQVDH 471
           ASL    HHH  +SH ++         + S   + G  +K   H P  S    ++R    
Sbjct: 29  ASLEACSHHHSSKSHKKSKKTKKHRKRSRSPTPDSGKSKKKRHHSPSASESDSEKRPKGK 88

Query: 472 QFERPSGTTCRLRRTRQHRDSQ 537
           +  R         R R  RD +
Sbjct: 89  EKSRKDADDSDQERDRSKRDKK 110


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420  TSTSRLVKGTRSSASGPSIRTTQ--WDNLQTAANKATP 527
            TS+S+ +   RSS +GPS  T +   +NL+T++   TP
Sbjct: 901  TSSSKSISSKRSSDAGPSAYTLKVIKENLRTSSLSVTP 938


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 403  VRKNEKHLPPGSSRGQDRRQVDHQFERPSGTTCRLRRTRQHRDSQRAP 546
            +R+ E+H      R  +RR    + E PS  + R R TR HRD ++ P
Sbjct: 1524 LRREEEHTRQSGWR--ERRGT--RSEEPSEGSTRRRSTRHHRDDRQQP 1567


>SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)
          Length = 412

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 226 SSDPRRCQCA*SAT*DLYEHDTPASGSTASLTTTIHHHP-KQSHSEAW*FNSSDYQEHGT 402
           S+D RRC C  +    L E +     + A+     HHH   QSHS+     SS   +  +
Sbjct: 105 SADVRRCFCRYAPP--LAEQEGQLIETEATGAPQKHHHTLNQSHSKHKRSKSSSETDPSS 162

Query: 403 VRKNEKHLPPGSS 441
             K +KH    SS
Sbjct: 163 HSKRQKHKKKKSS 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,477,004
Number of Sequences: 59808
Number of extensions: 467101
Number of successful extensions: 1434
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)