Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H06
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical pr...    28   5.3  
L25598-8|AAY86212.1|  185|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 545 HPDLDSDT-VAYLWTAPNDITGEVKFRASIIQSFVIFWVGIE 667
           H +L S T V  +W AP   +G V FRAS+I++  I++   E
Sbjct: 125 HANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAE 166


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 151 EGKAGHLRYSRDHYYNVPVY--DSGC 222
           +G  G L+Y RD Y N+PV+  ++GC
Sbjct: 354 DGLFGLLKYVRDKYNNIPVFITENGC 379


>Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical
           protein T05A10.2 protein.
          Length = 194

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 380 LELNYQASLWLCLG*WCMVVV 318
           L +N  ++ W+ +G WC+VV+
Sbjct: 158 LNINIGSAFWMAVGAWCLVVI 178


>L25598-8|AAY86212.1|  185|Caenorhabditis elegans Hypothetical
           protein C06G4.6 protein.
          Length = 185

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 85  NLPSYYSVHTFTLYTGYYTRPTEGKAGHLRYSRDHYYNVPVYDSGCDSSDP 237
           N P  ++     L        T    G+  YSR +YY +P Y++    S+P
Sbjct: 117 NNPQIFAREASKLPINQQQMQTYNPNGYNPYSRQNYYPIPWYNTASQPSNP 167


>Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical
           protein C16C10.7 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 139 TRPTEGKAGHLRYSRDHYYNVPVYDSGCDSSDPRR 243
           TRP        + + D    VP+Y  G DSSDPR+
Sbjct: 56  TRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRK 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,354,446
Number of Sequences: 27780
Number of extensions: 332898
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)