Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H05
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0086 + 18964493-18965737,18965896-18966360                       29   3.6  
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693...    27   8.3  
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61...    27   8.3  

>11_05_0086 + 18964493-18965737,18965896-18966360
          Length = 569

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 178 SIAAQYKRVFVP-MRNIHVAFAAHCRSNPALY*RIR*SNSIRHAKNPGDPPHG 333
           ++ A+++R  VP +R +HV+   +CRS+ +L         I +A N  DP  G
Sbjct: 100 ALLARHRRAAVPPLRALHVSTVGYCRSDASLV-----DQWIAYAVNQADPAVG 147


>08_02_0981 +
           23266174-23266689,23268389-23268549,23269068-23269309,
           23270180-23270284,23270746-23270902,23271860-23272028,
           23272598-23272638,23273151-23273216,23273524-23273779
          Length = 570

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +2

Query: 461 SPQLTFGTLVSAVCLLTRSLNH 526
           S QLT G L SAV    RSLNH
Sbjct: 487 SDQLTMGALESAVLAKFRSLNH 508


>04_01_0060 -
           607615-607706,608497-608531,609283-609360,610402-610550,
           610639-610730,611202-611280,611774-612150,613016-613226
          Length = 370

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -3

Query: 584 RAVCHRAGTGNR---YPPLHGKHDS 519
           RA C+R  T      +P LHGKHDS
Sbjct: 324 RAFCNRCKTQKEASVHPALHGKHDS 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,241
Number of Sequences: 37544
Number of extensions: 245617
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)