Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H05
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)             29   2.8  
SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 29   3.7  

>SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)
          Length = 506

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 545 PPLHGKHDSMI*STNRQPIPKYXXXXXXXXXRLSWVHRSAVRLE 414
           PP HG H  +I  T    +P Y          LSW+ +  ++LE
Sbjct: 290 PPYHGYH--LIMGTTLPWVPPYHGYRLIMSTTLSWLRQEKIQLE 331


>SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 1234

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +1

Query: 37   HGTLIWNDTVFIV-KIKRRVL 96
            HGT++W D V ++ K++RRVL
Sbjct: 1017 HGTIMWGDRVVVLPKLRRRVL 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,933
Number of Sequences: 59808
Number of extensions: 292269
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)