Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H05
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine re...    28   4.2  
AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine re...    28   4.2  

>AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform b protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = -1

Query: 289 LISGFFSRVLGLIGSAPRTQHEYYALVQTRAYTALQWKIYCNISKDYSPSNVCRFRMTAV 110
           +I+G+ S  L +  +A  + H   A +       ++W +YC I K  +   +    +   
Sbjct: 73  IIAGYCSGFLAVYLNA--STHYLMAFMMASMSAQMEWLVYCFIKKHQTIGKILSTHIIPA 130

Query: 109 RLLLLGRA 86
           +L  +G A
Sbjct: 131 KLFFVGEA 138


>AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform a protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = -1

Query: 289 LISGFFSRVLGLIGSAPRTQHEYYALVQTRAYTALQWKIYCNISKDYSPSNVCRFRMTAV 110
           +I+G+ S  L +  +A  + H   A +       ++W +YC I K  +   +    +   
Sbjct: 73  IIAGYCSGFLAVYLNA--STHYLMAFMMASMSAQMEWLVYCFIKKHQTIGKILSTHIIPA 130

Query: 109 RLLLLGRA 86
           +L  +G A
Sbjct: 131 KLFFVGEA 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,013
Number of Sequences: 27780
Number of extensions: 210887
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)