Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H05
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 37 HGTLIWNDTVFI 72
          +G  IWND VFI
Sbjct: 54 NGMQIWNDKVFI 65


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 249 AVRRERNMNITHWYKHALILRCNGK 175
           A+R  RN  + +  +  LIL C G+
Sbjct: 165 ALRIYRNGTVNYLMRRHLILSCQGR 189


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 249 AVRRERNMNITHWYKHALILRCNGK 175
           A+R  RN  + +  +  LIL C G+
Sbjct: 165 ALRIYRNGTVNYLMRRHLILSCQGR 189


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 249 AVRRERNMNITHWYKHALILRCNGK 175
           A+R  RN  + +  +  LIL C G+
Sbjct: 216 ALRIYRNGTVNYLMRRHLILSCQGR 240


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 249 AVRRERNMNITHWYKHALILRCNGK 175
           A+R  RN  + +  +  LIL C G+
Sbjct: 165 ALRIYRNGTVNYLMRRHLILSCQGR 189


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 298 GCYLISGFFSRVLGLIGS 245
           GC+L   + S ++G+IG+
Sbjct: 302 GCFLFRAWESIIVGMIGA 319


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 316 QGSLHDGCYLISGFFS 269
           +G+L  GC L+SG  S
Sbjct: 343 RGTLKKGCLLVSGIAS 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,516
Number of Sequences: 438
Number of extensions: 2845
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)