Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H04
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.4  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 261  REETSHRLKEIPIKLCNESDFD 196
            RE+ SH LKE+ +    ESD++
Sbjct: 1266 REKLSHELKELTVYYMVESDYE 1287


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 139  SQSVVINFIISTVQGKFQIC 80
            S S+++ FI     G+FQ+C
Sbjct: 3276 SASIIVQFITDLTVGEFQLC 3295


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -2

Query: 327 YSIKNGPNFFCKGPNLFLVLIKREETSHRLKEIPIKLCNESDFDN 193
           + + NG ++ C  P  + V       +  L  I   +C   DFD+
Sbjct: 222 FQLSNGSSYSCNAPTFWDVTGLPINNTEDLNSISEVMCLSGDFDH 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,974
Number of Sequences: 5004
Number of extensions: 32444
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)