Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H04
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_39875| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_28874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)               27   7.3  

>SB_49652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 292 LTKKIGSILY*ILF---KTILCGEKLCEIEKMIRE 387
           + K +GSI+  I+F    T +C + +CE E ++RE
Sbjct: 60  IRKAVGSIIMFIMFHVSNTEICTKSICEYEFVVRE 94


>SB_39875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 292 LTKKIGSILY*ILF---KTILCGEKLCEIEKMIRE 387
           + K +GSI+  I+F    T +C + +CE E ++RE
Sbjct: 8   IRKAVGSIIMFIMFHVSNTEICTKSICEYEFVVRE 42


>SB_28874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 292 LTKKIGSILY*ILF---KTILCGEKLCEIEKMIRE 387
           + K +GSI+  I+F    T +C + +CE E ++RE
Sbjct: 8   IRKAVGSIIIFIMFHVSNTEICTKSICEYEFVVRE 42


>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 563

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 430 FDQILIWFYRSSCHFLGFYCTCYP 501
           FD I  W+Y+S   F G++ TC P
Sbjct: 437 FDMIRQWYYQSCTQF-GYFQTCEP 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,648,569
Number of Sequences: 59808
Number of extensions: 205974
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)