Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H04
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14500.1 68415.m01623 F-box family protein contains F-box dom...    27   5.9  
At2g32905.1 68415.m04034 hypothetical protein contains Pfam prof...    27   7.9  

>At2g14500.1 68415.m01623 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 347

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 439 ILIWFYRSSCHFLGFY 486
           + +WF   SC+FL FY
Sbjct: 169 VAVWFLEDSCNFLAFY 184


>At2g32905.1 68415.m04034 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 205

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 288 PNLFLVLIKREETSHRLKEIPIKLCNESDFDNISSHFSIP 169
           P   L ++KREE S+  K I  +   ++D  ++ +  S+P
Sbjct: 141 PEWLLKVMKREENSYNPKLISTRKLYKTDLASLQARLSVP 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,933,787
Number of Sequences: 28952
Number of extensions: 150441
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)