Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H03
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 180 5e-46
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 179 2e-45
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 156 1e-38
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570... 30 1.1
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 30 1.4
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 28 4.4
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702... 28 4.4
11_06_0007 - 19171122-19172036 28 5.8
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 5.8
04_01_0014 - 231228-233179,233522-233714 27 7.7
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 180 bits (439), Expect = 5e-46
Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 3/170 (1%)
Frame = +3
Query: 30 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIMEIP 209
+Y+V+GR LP+ ++ P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I++I EI
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 210 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 389
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 390 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 530
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 179 bits (435), Expect = 2e-45
Identities = 81/170 (47%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Frame = +3
Query: 30 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIMEIP 209
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 210 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 389
E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 390 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 530
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 156 bits (379), Expect = 1e-38
Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 20/187 (10%)
Frame = +3
Query: 30 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQL 158
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+L
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKL 67
Query: 159 KKFKKTTGEIVSIMEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 338
KK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y
Sbjct: 68 KKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 127
Query: 339 DMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFA 509
+M +RHR R IQIIK + C+R KQFH I FPL R K TF
Sbjct: 128 EMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFK 187
Query: 510 YKRPSTY 530
RP+ +
Sbjct: 188 ASRPNLF 194
>11_01_0692 -
5700394-5700474,5700546-5702675,5705033-5706169,
5709679-5709975
Length = 1214
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 144 FLRQLKKFKKTTGEIVSIMEIPEKSPVKIKNFGIWL 251
F R L+ F+ T I ++ME EK +K K +WL
Sbjct: 36 FRRDLECFRNTLESIEAVMEDAEKRSIKEKTVQLWL 71
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 305 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFHDGYNFTSSLFELLQLPQEIPE 135
+++ F V I +L+ P+T VLNL + +F T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 141 YFLRQLKKFKKTTGEIVSIMEIPEKSPVKIK 233
YF R+L + KK E ++EIP +KI+
Sbjct: 136 YFYRELSRIKKQKKEKSLVIEIPRTQEIKIE 166
>07_03_1792 +
29569623-29569737,29569848-29569981,29570117-29570284,
29572817-29573003,29573098-29573422,29573591-29574368,
29574897-29575022
Length = 610
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 156 LKKFKKTTGEIVSIMEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCY 335
LK+F + + ++++ +K K +NFG +RY+SR + R V AV
Sbjct: 541 LKRFTQREHRVAAVIKFRQKR--KERNFGKKVRYQSRKRLAEQRPRVRGQFVRQAVQDQQ 598
Query: 336 RDMGARHRA 362
+ G R A
Sbjct: 599 QQGGGREAA 607
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -1
Query: 442 WNCLTCGRRHAAALITST--LMICIECARALCLAPISL 335
W C CG R AA L+ L +C C P+ L
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 484 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 356
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 145 KYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMT 38
+Y D AT EK L GGFGS+ +G LR +T
Sbjct: 407 RYSDLDHATKNFSEK---LGEGGFGSVFKGVLRDLT 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,933,992
Number of Sequences: 37544
Number of extensions: 307488
Number of successful extensions: 870
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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