Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H03
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   223   9e-59
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    23   6.2  
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  223 bits (544), Expect = 9e-59
 Identities = 99/176 (56%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
 Frame = +3

Query: 9   KAKGE-LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 185
           KA GE L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 186 IVSIMEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 365
           I+SI ++ EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 366 AHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNTFAYKRPSTYF 533
           A  I I+KV+ +KA   +R  +K FH +KI FPLP RV + K L+ F   R +T+F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
            C35C5.6 protein.
          Length = 1224

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 217  LFSGISMM-DTISPVVFLNFFNCLKKYQKRDFATIGSGEKILI 92
            L S +S++   + P + L+FF   K+Y   D  T+G G+ + +
Sbjct: 1080 LLSSVSLLKQLVLPAISLDFFVNGKQYVSEDDVTVGIGQFVTV 1122


>Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical
           protein C44C10.7 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 180 GEIVSIMEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGG 317
           G I+    +   +PVKI +FGI  R+ +R G H +    RD+   G
Sbjct: 184 GNILFASRLTPTAPVKIVDFGIGRRFANRRG-HPIPSPSRDIDFLG 228


>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 321 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL 467
           VT  +++ GAR+     + Q  K  VI A+A        +H  ++G P+
Sbjct: 143 VTGSFKERGARYALSKMAEQFKKAGVIAASAGNHALALSYHGQQMGIPV 191


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 23.0 bits (47), Expect(2) = 6.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 559 SSFHT*NYIKYVLGLLYAKVLRRLYW*TRFGSGKPILLV 443
           S+ +T N I  +   L   VLR+LY  + F +   +LLV
Sbjct: 27  SNVYTNNIIAIITWTLTVVVLRKLYTKSIFPNSTLVLLV 65



 Score = 23.0 bits (47), Expect(2) = 6.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 460 KPILLVWNCLTCGRRHAAALITSTLMICIECA 365
           +P  +++N   C   + A +    LMIC  CA
Sbjct: 95  QPCKIMFNEYECYPFYTANIFIRLLMICTNCA 126


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 147 LRQLKKFKKTTGEIVSIMEIPEKSPVKIKNFGI 245
           LR   K   T G+   ++ + E +P KI+NFGI
Sbjct: 15  LRVSCKHYSTAGDPTKLVNLSEFTPDKIRNFGI 47


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 284 HIVDTRARLVTQPDTKVLNLNRTLFWNFHDGYNFTSSLFELLQLPQEIPE 135
           HI+    +L+  P T  L   +  F     G   T     LL++P EI E
Sbjct: 288 HILSPYGKLLESPSTATLRFRKIPFLKVEYGIQVTLGTDILLEIPIEIGE 337


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 18  GELKEYEVIGRKLPSESEPK-PPLYKMRIFSPDPIVAKSRFWY 143
           G  +E  ++    PS S P  PP Y+ +      IV  S FW+
Sbjct: 73  GTSEENSLLSPDSPSSSTPNFPPQYESQNLKESVIVRNSIFWF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,790
Number of Sequences: 27780
Number of extensions: 267734
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)