Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H03
(559 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 188 3e-48
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 187 4e-48
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 182 1e-46
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 34 0.074
At2g35200.1 68415.m04317 expressed protein 33 0.17
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 30 1.2
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 29 1.6
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam... 28 3.7
At4g13980.1 68417.m02162 heat shock transcription factor family ... 28 4.9
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 8.5
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 27 8.5
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 8.5
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 188 bits (457), Expect = 3e-48
Identities = 84/172 (48%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
Frame = +3
Query: 24 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIME 203
L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I E
Sbjct: 6 LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINE 65
Query: 204 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 383
I EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQI
Sbjct: 66 IFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125
Query: 384 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 530
IK + A+ C+R KQFH SKI FPL R K TF +P+ +
Sbjct: 126 IKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 187 bits (456), Expect = 4e-48
Identities = 80/146 (54%), Positives = 111/146 (76%)
Frame = +3
Query: 30 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIMEIP 209
+Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 210 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 389
EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 390 VEVIKAAACRRPQVKQFHTSKIGFPL 467
+ A C+R KQFH SKI FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 182 bits (443), Expect = 1e-46
Identities = 77/146 (52%), Positives = 109/146 (74%)
Frame = +3
Query: 30 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIMEIP 209
+Y+V+GR LP+E++ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67
Query: 210 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 389
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIK 127
Query: 390 VEVIKAAACRRPQVKQFHTSKIGFPL 467
+ A C+R KQFH SKI FPL
Sbjct: 128 TATVPAKLCKREITKQFHNSKIKFPL 153
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 33.9 bits (74), Expect = 0.074
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 75 KPPLYKMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIMEIPEKSPV 224
+PP++ R +P PI +++RF + Q + +T E +S +E P K+ V
Sbjct: 11 RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 99 IFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIMEIPEKSPV 224
+FSP P+ +K WYF +K F+++ VS M ++SP+
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQSR---VSKMIFQQRSPL 198
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 156 LKKFKKTTGEIVSIMEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 302
+++F+K E+++ E+PE + PV + +G W + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 12 AKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 179
AKG ++ + +LPS SEP PP R F D V+ + W R KK TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 784
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 226 LTGLFSGISMMDTISPVVFLNFFNCLKKYQK 134
LT LF G++ + T + L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323
>At4g13980.1 68417.m02162 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 466
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 27 KEYEVIGRKLPSESEPKPPLY-KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIME 203
+E V+ ++ S K + K+ F +VAK +F + + ++++ +E
Sbjct: 129 QERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLE 188
Query: 204 IPEKSPVKIKNFG 242
++P +KNFG
Sbjct: 189 TAIRNPTFVKNFG 201
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 451 LLVWNCLTCGRRHAAALITSTLMIC 377
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 451 LLVWNCLTCGRRHAAALITSTLMIC 377
L+VWN LT + HA L + +M C
Sbjct: 27 LIVWNALTSQKTHAIKLPCAWVMTC 51
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 451 LLVWNCLTCGRRHAAALITSTLMIC 377
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,054,657
Number of Sequences: 28952
Number of extensions: 246361
Number of successful extensions: 736
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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