Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_H02
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    28   0.70 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   1.6  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   2.8  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   2.8  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   2.8  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   3.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   5.0  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.0  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    25   5.0  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   6.6  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    25   6.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    24   8.7  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    24   8.7  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    24   8.7  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 124 CQH-RNCIQCRPSLCCCESFA 65
           C+H R+CI+  PSL CC  F+
Sbjct: 163 CKHWRDCIKKEPSLFCCLDFS 183


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 20/82 (24%), Positives = 28/82 (34%)
 Frame = +3

Query: 48  SGHAEYAKLSQQHKLGRHWIQFLCWQRWTGIRRSRLEGCWYTCWERQQPEXXXXXXXXXX 227
           S H  Y     QH+  +     LC +        +   C YTC ++  P+          
Sbjct: 399 SVHEVYGHKFLQHQFYQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSS 458

Query: 228 XXPSSRKAVINDKISHRTGSTT 293
              SS    IN +I H   S T
Sbjct: 459 DSASSEYEKINHRIPHHFESHT 480


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 97  DIGYNFCVGSDGLAYEGRGWKVV 165
           + GY F + S  LAY+GRG  VV
Sbjct: 136 EFGYPFVLKSKTLAYDGRGNYVV 158


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 354 SGSSTVYVPFYLETFSSWTCGVQT 425
           S   T+YV  Y+++  SW C  QT
Sbjct: 435 SDGETLYVHIYVKSSKSWRCMSQT 458


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 174 MYTNNLPASTFVCQSIAANTEIVSNVAPVYAVVKVLHTL 58
           +Y +N+P   F+C   AAN      ++    VV  L T+
Sbjct: 342 IYESNVPNELFICTRRAANNMAYQKLSKERGVVSELGTI 380


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 214 IGDWRDDLPPEKQLSTTK 267
           +G W D +PPEK+ ++T+
Sbjct: 621 VGMWHDYVPPEKKAASTE 638


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 238  PPEKQLSTTKSLIAQGVQLGVISSEYKLIGHN 333
            PP+  L T   +I +GV L  I   Y  I  N
Sbjct: 1531 PPDSALDTVPKVITEGVNLKAIWEFYNEISMN 1562


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 251 SYQRQNLSSHREYNXXXXXXXXXXXXTIKPWQLNVREQHCLRTFLPGN 394
           SY+  +LSSHR+Y              +K  +  + ++  L  +L G+
Sbjct: 128 SYENPSLSSHRQYQIPTPIQLASSASLLKKVESFIAKELLLFEYLDGH 175


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = +1

Query: 163 VGIHAGNANSQSVGICLIGDWRDDLPPEKQ-------LSTTKSLIAQGVQ 291
           +G  A N +     I  + +WRD  PPE++       L  T +LI+ GV+
Sbjct: 55  IGFQATNLHDAVTIINEMRNWRDPNPPEEKSDRATIFLGYTSNLISSGVR 104


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 367 LFTYLSTWKHFHPG 408
           L+ Y+STW+ +H G
Sbjct: 152 LYFYISTWEEYHTG 165


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 76  ESFAYSACPECIGRWYNR 23
           + + + A  ECIGRW+ +
Sbjct: 54  DMYGFGANEECIGRWFKQ 71


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 278 AMRDFVVDNCFSGGRSSRQSPIKQI 204
           A+ DFVV   + GG S+R S I  +
Sbjct: 198 ALNDFVVPPLYEGGPSTRLSLITDV 222


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
 Frame = +1

Query: 127 DGLAYEGRGWKVVGIHAGNA--------NSQSVGICLIGDW 225
           DGL+ + R  K VG H  N+        N+Q VG  +  DW
Sbjct: 687 DGLSSDSRSPKTVGTHESNSYEFDGASNNNQRVGDDVSKDW 727


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 242 QKSSYQRQNLSSHRE 286
           Q SSY R+ L+SHRE
Sbjct: 120 QHSSYLRRELNSHRE 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,940
Number of Sequences: 5004
Number of extensions: 45685
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)