Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H02
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 30 0.92
04_03_0305 - 14125193-14125421,14125666-14127104 29 1.2
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 1.6
12_02_0674 - 21745321-21746223,21746229-21747608 28 2.8
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 28 2.8
01_06_0146 + 26969011-26969995,26970878-26970930 28 3.7
01_01_0595 - 4430738-4430785,4430904-4432679 27 6.5
06_03_0209 + 17965828-17965888,17965913-17966329,17966501-17966523 27 8.6
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356... 27 8.6
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926... 27 8.6
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 8.6
01_05_0691 + 24330491-24332269 27 8.6
01_01_0578 - 4296867-4296913,4296927-4297015,4297270-4297394,429... 27 8.6
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 29.9 bits (64), Expect = 0.92
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = -2
Query: 109 CIQCRP---SLCCCESFAYSACPECIGRWYN 26
C QCR ++CC C CI RWY+
Sbjct: 151 CHQCRRVANTICCTSCDRRGYCTNCISRWYS 181
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 201 DALAVGVPSMYTNNLPASTFVCQSIA--ANTEIVSNVAPVYAVVKVLHTLHVLNALVGGI 28
DA GVP +P + V + A EIV+ VA A K + LH+++A+ +
Sbjct: 475 DAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSV 534
Query: 27 TG 22
+G
Sbjct: 535 SG 536
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 224 QSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPT 117
Q+ + Q P + P +PTT P P+ +P LPT
Sbjct: 17 QAAMAQRPGMPPAVVPPSLPTTTPPAPTVVAPPLPT 52
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.3 bits (60), Expect = 2.8
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = -1
Query: 314 YSELITPSCTPCAMRDFVVD---NCFSGGRSSRQSPIKQIPTL-----WLLAFPACIPTT 159
Y + P+C P +D NC GGR +++ ++ P L + +P++
Sbjct: 349 YFSVEPPACVPAETAMVELDDKGNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSALPSS 408
Query: 158 FQPRPSYASPSLPTQKLYPM-SPQ 90
+P P +P+ PT P+ SP+
Sbjct: 409 SKPAPKKITPTPPTLAPPPLISPK 432
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 242 GGRSSRQSPIK--QIPTLWLLAFPACIPTTFQPRPSYASPSLPTQKLYP 102
GG S I+ Q P FP P QP P +A P+ P Q+ P
Sbjct: 47 GGNGPVPSSIRAPQAPPPGARPFPGSPPPPSQPPPPFARPAAPVQQQPP 95
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 185 AFPACIPTTFQPRPSYASPSLPTQKLYPMSPQFML 81
A P P QP P PSLP P SP+ ML
Sbjct: 101 AAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESML 135
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.1 bits (57), Expect = 6.5
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Frame = -1
Query: 296 PSCTPCAMRDFVVDNCFSGGRSSRQSPIKQ---IPTLWLLAFPACIPTTFQ-------PR 147
P C P R + GG + P K+ P + PAC+P + P
Sbjct: 55 PVCLPAKKRAYAAAAAVEGGGFALCLPAKKRAYAPPVDDAVAPACLPAKKRIHAPPPPPP 114
Query: 146 PSYASPSLPTQK 111
S ASPS+PT K
Sbjct: 115 DSGASPSVPTTK 126
>06_03_0209 + 17965828-17965888,17965913-17966329,17966501-17966523
Length = 166
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 135 GIRRSRLEGCWYTCWERQQ 191
GI L G WY WER+Q
Sbjct: 79 GIAELILTGAWYILWERRQ 97
>04_01_0266 -
3563075-3563109,3563405-3564754,3564862-3564965,
3564967-3565421
Length = 647
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 90 LGRHW-IQFLCWQRWTGIRRSRL-EGCWY 170
LG W + FLC RW+ +R + L G W+
Sbjct: 287 LGSSWALDFLCAMRWSWLRHAALCTGRWH 315
>03_02_0534 -
9267297-9267734,9268376-9268649,9268782-9268889,
9269476-9269567,9269652-9269711,9269812-9269994
Length = 384
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 133 VHRCQHRNCIQCRPSLCCCESFAYSACPEC 44
V C H+ C C +LCC + +A C
Sbjct: 262 VRECGHQMCAACTLALCCHAKPSAAAATPC 291
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 91 WGDIGYNFCVGSDGLAYEGRGWKVVGIHAGNANSQSVGICLIGDWRDDL---PPEKQLST 261
W ++ +GSD L + + V +H + + Q + + W D++ PE +
Sbjct: 294 WQFHNFHMLLGSDLLIFSNEKYMAVSLHLWDVSRQVTPLNWLEAWLDNIMASVPELAICY 353
Query: 262 TKSLIAQGVQL 294
++ + QG +L
Sbjct: 354 HQNGVVQGYEL 364
>01_05_0691 + 24330491-24332269
Length = 592
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 188 LAFPACIPTTFQPRPSYASP 129
+ F +C TF+P+PS ASP
Sbjct: 14 IKFSSCRGVTFEPKPSPASP 33
>01_01_0578 -
4296867-4296913,4296927-4297015,4297270-4297394,
4297476-4297522,4297864-4298222,4298386-4298552,
4298800-4298846,4299148-4299193,4299586-4299669,
4300801-4300869
Length = 359
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/48 (20%), Positives = 23/48 (47%)
Frame = +1
Query: 28 YTTDQCIQDMQSMQNFHNSINWGDIGYNFCVGSDGLAYEGRGWKVVGI 171
Y +D ++Q + N +++W ++ YN SD + + + G+
Sbjct: 182 YFSDFASYNIQKVLNHITAMHWENLSYNGAFNSDNIIFHNGAVTIQGV 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,773
Number of Sequences: 37544
Number of extensions: 314921
Number of successful extensions: 1103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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