Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H02
(431 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.23
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.23
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 31 0.31
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23) 29 2.2
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61) 28 3.8
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 28 3.8
SB_60| Best HMM Match : ABC_membrane (HMM E-Value=0.00037) 28 3.8
SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06) 27 5.0
SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_43575| Best HMM Match : Sina (HMM E-Value=0) 27 5.0
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 27 5.0
SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31) 27 5.0
SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38) 27 5.0
SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2) 27 6.6
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081) 27 6.6
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_6911| Best HMM Match : Ank (HMM E-Value=0) 27 6.6
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) 27 8.7
SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8) 27 8.7
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 145 GRGWKVVGIHAGNANSQSVGICLIGDWRDDLPPEKQLSTTKSLIAQ 282
G G +H N+N G D RDD PPE STT+ AQ
Sbjct: 152 GGGQNACVLHRQNSNGTESGDDHFEDCRDDSPPETSTSTTRYHNAQ 197
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 145 GRGWKVVGIHAGNANSQSVGICLIGDWRDDLPPEKQLSTTKSLIAQ 282
G G +H N+N G D RDD PPE STT+ AQ
Sbjct: 192 GGGQNACVLHRQNSNGTESGDDHFEDCRDDSPPETSTSTTRYHNAQ 237
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 31.5 bits (68), Expect = 0.31
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 148 DLRMPVHRCQHRNCIQCRPSLCCCESFAYSACPECIG 38
DLR V H + ++C S C C F Y C EC G
Sbjct: 947 DLRRGVCTSGH-SWLRCAVSFCICAEFKYHVCIECRG 982
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 29.9 bits (64), Expect = 0.93
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 166 QQPSSLDLRMPVHRCQHRNCIQCRPSLCCC---ESFAYSACPECIGRWY 29
Q+P SL + C+HR+CI+C ES CPEC R++
Sbjct: 85 QRPRSLF--PDISTCEHRSCIECLRQYMTIEINESRVNLTCPECSERFH 131
>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
Length = 299
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 392 FQVERYVNSAAPGHSVAMA*LCPINLYSELITPSCTPCAMRDFVV--DNCFSGGRSS 228
++ E+YV H +A+ L +S ++P C P D + +NCF+ G+S+
Sbjct: 104 YKHEKYVGGKDKKHDLALIKLAKPATFSTKVSPVCLP-KQGDLMKERENCFATGKSA 159
>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
Length = 375
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 208 KYRRSGCWRSQHVYQQPSSLDLR-MPVHRCQHRNCIQCRPSLCCCESFAYSACPE 47
KY+ C H P+S+ + + RN +C+ CE A +CP+
Sbjct: 270 KYKFVACIEKHHPTLPPTSMPSNETEIEGLERRNMTKCKVMFKKCEKAAGDSCPK 324
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 246 FWRKVISPITDQANTDALAVGVPSMYTNNLPASTFVCQSIAANTEIVSNVAPV---YAVV 76
FW ++I +Q+ +L + S NNL +F+ S A T ++ P Y V
Sbjct: 681 FWEQLIRHQDEQSMALSLVISARSWMNNNLDLVSFLFVSAVAATAAITQQDPACIGYDVY 740
Query: 75 KVL 67
+VL
Sbjct: 741 QVL 743
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 152 PRPSYASPSLPTQKLYPMSP 93
PR S SPS P++ +Y MSP
Sbjct: 59 PRESLISPSTPSEVIYQMSP 78
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 21 CLLYHRPMHSGHAEYAKLSQQHK 89
CLLYHRP S H ++L H+
Sbjct: 420 CLLYHRPRLSNHHRPSRLLHCHR 442
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 30 YHRPMHSGHAEYAKLSQQHKLGRH 101
+HRP H +LS H+L RH
Sbjct: 259 HHRPSRHLHCHCPRLSNHHRLSRH 282
>SB_60| Best HMM Match : ABC_membrane (HMM E-Value=0.00037)
Length = 274
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 246 FWRKVISPITDQANTDALAVGVPSMYTNNLPASTFVCQSIAANTEIVSNVAPV---YAVV 76
FW ++I +Q+ +L + S NNL +F+ S A T ++ P Y V
Sbjct: 170 FWEQLIRHQDEQSMALSLVISARSWMNNNLDLVSFLFVSAVAATAAITQQDPACIGYDVY 229
Query: 75 KVL 67
+VL
Sbjct: 230 QVL 232
>SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)
Length = 285
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -3
Query: 207 NTDALAVGVPSM--YTNNLPASTFVCQSIAAN 118
+TD +A P+M Y NNLP +T V ++ AN
Sbjct: 196 DTDVIASHRPAMLDYLNNLPNNTLVVVTVQAN 227
>SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 137 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 250
H KV GR +V G PT R S F S++ + QKS
Sbjct: 25 HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 62
>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
Length = 432
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -2
Query: 172 VYQQPSSLDLRMP-VHRCQ--HRNCIQCRPSLCCC 77
+++ P D +P + +C H C CRP L CC
Sbjct: 34 IFECPVCFDYVLPPILQCSSGHLVCSNCRPKLTCC 68
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 61 SMQNFHNSINWGDIGYNFCVGSDGLAYEGRGWKVVGIHAGNANSQSV 201
S Q H S++ G +G+N V ++ +G K G SQSV
Sbjct: 1850 SDQGEHTSVSSGTMGFNRTVATEPTVIQGPPSKHTGCQTDQGPSQSV 1896
>SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)
Length = 927
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 137 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 250
H KV GR +V G PT R S F S++ + QKS
Sbjct: 536 HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 573
>SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 137 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 250
H KV GR +V G PT R S F S++ + QKS
Sbjct: 67 HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 104
>SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)
Length = 663
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 137 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 250
H KV GR +V G PT R S F S++ + QKS
Sbjct: 404 HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 441
>SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)
Length = 576
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 19 TACYTTDQCIQDMQSMQNFHNSINWGDIGYNFCVGSDG 132
T Y TD I+DM N ++I+ D Y F DG
Sbjct: 363 TLSYLTDSPIEDMNVFDNVSSAISPQDSFYYFYQADDG 400
>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
Length = 667
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 233 SSRQSPIKQIPTLWLLAFPACIPTTFQPRPSY-----ASPSLPTQKLYPMSPQFM 84
SS P PT+ +++ P P R ++ A+ S PT+K+ P SPQ M
Sbjct: 334 SSPGVPPSPPPTMTIVSKPTSTPVPVPRRATFSGLPQAAFSQPTKKITPTSPQSM 388
>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -3
Query: 162 NLPASTFVCQSIAANTEIVSNVAPVYAVVKVL---HTLHVLNALVGGITGSR 16
N P TFV Q A +++I SN YAV+ + +NA G IT SR
Sbjct: 430 NEPPGTFVIQVSANDSDIGSNAMVSYAVLSDAEGHYQYFKINAKNGTITTSR 481
>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
Length = 1961
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 61 SMQNFHNSINWGDIGYNFCVGSDGLAYEGRGWKVVGIHAGNANSQSVGICLIGD 222
++ +FH S+N + + + S + GR W + ++ + + GI + GD
Sbjct: 339 AIASFHGSVNPKEFDFTDYLVSKNEGFLGRRWLLEKVYNASKGKGNKGIIITGD 392
>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 211 SKYRRSGCWRSQHVYQQPSSLDLRMPVHRCQHRNCIQCRPSL 86
SK R G W ++ ++ + D ++ R N I+C P L
Sbjct: 422 SKSIRCGDWENEEQFEVKGTADAQLGTPRIARINAIKCVPGL 463
>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
Length = 1275
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -3
Query: 408 SRMKMFPGRKVRKQCCSRTFS 346
S+++ PG++ RK CC+ +F+
Sbjct: 1039 SKLQQKPGKQARKACCTLSFN 1059
>SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)
Length = 815
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 36 RPMHSGHAEYAKLSQQHKLGRHWIQFLCWQRW 131
RP S E+ + QQH +H +Q L W R+
Sbjct: 64 RPSTSQGNEHQRPLQQHNPSQHIVQPLAWTRY 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,101,195
Number of Sequences: 59808
Number of extensions: 360242
Number of successful extensions: 1105
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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