Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_H02
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put... 29 1.8
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ... 28 2.4
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 3.1
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 3.1
At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to... 28 3.1
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 27 4.1
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 27 5.5
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 27 5.5
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 27 5.5
At1g36970.1 68414.m04608 hypothetical protein 27 5.5
At5g10010.1 68418.m01159 expressed protein 27 7.2
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 27 7.2
At4g01500.1 68417.m00193 DNA-binding protein, putative similar t... 27 7.2
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ... 27 7.2
At1g77770.2 68414.m09056 expressed protein 27 7.2
At1g77770.1 68414.m09055 expressed protein 27 7.2
At5g56250.2 68418.m07020 expressed protein 26 9.6
At5g56250.1 68418.m07019 expressed protein 26 9.6
At2g25970.1 68415.m03117 KH domain-containing protein 26 9.6
>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase, gi|2129635; contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 843
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 265 LSLITAFLEEGHLANHRSSKYRRSGCWRSQ 176
+ LI F+ G++A+H + KY+ + WR +
Sbjct: 629 MGLIYEFMANGNMADHLAGKYQHTLSWRQR 658
>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 124 SDGLAYEGRGWKVVGIHAGNANSQSV 201
SDG AY W V +H G+ N V
Sbjct: 455 SDGFAYSSHEWSDVDVHCGSLNEPLV 480
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 248 FSGGRSSRQSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPTQKLYPMSP 93
FSG P+ P L P+ P++ P + +SP++P YP P
Sbjct: 196 FSGSNGQPPLPVSPPPPL-----PSSHPSSLFPVTTNSSPTIPPSSSYPQMP 242
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 248 FSGGRSSRQSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPTQKLYPMSP 93
FSG P+ P L P+ P++ P + +SP++P YP P
Sbjct: 196 FSGSNGQPPLPVSPPPPL-----PSSHPSSLFPVTTNSSPTIPPSSSYPQMP 242
>At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575; contains Pfam
profile PF00892: Integral membrane protein
Length = 370
Score = 27.9 bits (59), Expect = 3.1
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = -3
Query: 249 LFWRK----VISPITDQ----ANTDALAVGVPSMYTNNLPASTFVCQSIAANTEIVSNVA 94
+FWR ++ P+ DQ + S +TN LPA TF+ ++ E V N
Sbjct: 73 IFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFIL-ALIFRLETV-NFR 130
Query: 93 PVYAVVKVLHTL 58
V++V KV+ T+
Sbjct: 131 KVHSVAKVVGTV 142
>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 966
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 278 AMRDFVVDNCFSGGRSSRQSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPT 117
A+ D NCF G+ +R+ KQ WL +P F R S ++PT
Sbjct: 824 AIEDLYFSNCFKLGQEARRVITKQSRDAWLPG--RNVPAEFHYRAVGNSLTIPT 875
>At3g53090.1 68416.m05851 HECT-domain-containing protein /
ubiquitin-transferase family protein / IQ
calmodulin-binding motif-containing protein contains
Pfam profiles PF00632: HECT-domain
(ubiquitin-transferase), PF00612: IQ calmodulin-binding
motif
Length = 1142
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 82 SINWGDIGYNFCVGSDGLAYEGRGW 156
SIN D GYNFC + G + + + W
Sbjct: 125 SINSNDQGYNFCSLAVGTSEDSKTW 149
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 151 GWKVVGIHAGNANSQSVGICLIGDWRDDLPPEKQLSTTKSLIAQGVQLGVISSE 312
GWK + A N +QS+ L D++DD E+ + ++ + + ++SE
Sbjct: 158 GWKAAAVGANNQAAQSI---LKQDYKDDATREEAVELALKVLTKTMDSTSLTSE 208
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = -1
Query: 230 SRQSPIKQIPTLWLLAFPACIP------TTFQPRPSYASPSLPTQKLYPMSP 93
S++S I + + L +P P + ++P PS ASP++ YP++P
Sbjct: 375 SQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNP 426
>At1g36970.1 68414.m04608 hypothetical protein
Length = 439
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -3
Query: 249 LFWRKVISPITDQANTDALAVGVPSMYTNNLPASTFVCQSIAAN-TEIVSNVAPVY 85
L WR++ + T++ + D+ P Y N P S F+ + I+AN TE+ ++ P+Y
Sbjct: 283 LSWRELKTHKTNKDSVDS-----PQNYLNETP-SMFIPKFISANSTEVPTSHQPIY 332
>At5g10010.1 68418.m01159 expressed protein
Length = 434
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = -1
Query: 284 PCAMRDFVVDNC----FSGGRSSRQSPIKQIPTLWLLAFPACIPTTFQP-RPSYASPSLP 120
P RD VD F+ G + R+S ++ + L F C+P +QP + S
Sbjct: 257 PIEKRDRQVDKMNSQIFTLGCTQRRSALRHMKEDQLKKFEYCLPYFYQPFKEDELEQSTE 316
Query: 119 TQKLYPMSP 93
Q ++P P
Sbjct: 317 VQIMFPSEP 325
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 170 IPTTFQPRPSYASPSLPTQKLYPMSP 93
+PT P PS +PS+P+ P++P
Sbjct: 59 VPTPSVPTPSVPTPSVPSPNPTPVTP 84
>At4g01500.1 68417.m00193 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857, RAV2 GI:3868859; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 328
Score = 26.6 bits (56), Expect = 7.2
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -1
Query: 140 YASPSLPTQKLYPMSPQFML 81
+ SP+ PT + YP++P++ +
Sbjct: 156 FGSPTYPTARFYPVTPEYSM 175
>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 456
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 133 VHRCQHRNCIQCRPSLCC 80
V C H+ C QC +LCC
Sbjct: 331 VKDCGHQMCAQCTLALCC 348
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 94 PSLCCCESFAYSACPECIGRWYN 26
PS CC + +A S CP C+ +N
Sbjct: 18 PSPCCKKEWAGSTCPVCLESPHN 40
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 94 PSLCCCESFAYSACPECIGRWYN 26
PS CC + +A S CP C+ +N
Sbjct: 18 PSPCCKKEWAGSTCPVCLESPHN 40
>At5g56250.2 68418.m07020 expressed protein
Length = 811
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 44 AFRTCRVCKTFTTA 85
A RTC +CKTF++A
Sbjct: 174 ALRTCPICKTFSSA 187
>At5g56250.1 68418.m07019 expressed protein
Length = 811
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 44 AFRTCRVCKTFTTA 85
A RTC +CKTF++A
Sbjct: 174 ALRTCPICKTFSSA 187
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 103 GYNFCVGSDGLAYEGRGWKVVGIHAGNANSQS 198
GYN+ + G G+G++ G A NA+ QS
Sbjct: 415 GYNYYQHASGYGQAGQGYQQDGYGAYNASQQS 446
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,073,396
Number of Sequences: 28952
Number of extensions: 244802
Number of successful extensions: 786
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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