Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G19
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.50 
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   2.7  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   6.2  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   8.2  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = +2

Query: 206  VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDXGEGGFWVSYEDP 382
            V  L+SYP++  ++   + +    +LR++N P +  F  +A   P    E GF+V   D 
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873

Query: 383  DT----AGNKASYVKTKNLGGVSI-MDLSMD 460
            +T    A  +AS+   +N   + + + +SMD
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISMD 1904


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 499 DRIFISSAKTTKIIHGKVHDGHTAKVLCFHVTSF 398
           D +F +    T ++H K   G T  V+C ++ +F
Sbjct: 114 DALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAF 147


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 170
           PT L    SA  DVR +S   +   +FH+Y+
Sbjct: 51  PTELKARTSATFDVRSASTSPINASDFHKYS 81


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +2

Query: 41  DAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPP-----IHADXGGEAGPYTK 205
           + A  YWI+    T + +LG S   + + +     IS + P      H+   G  GP TK
Sbjct: 792 EKATTYWIKGTEFTVERLLGYSNEAQRF-VGGSICISRLAPQDYHRFHSPVNGCIGPITK 850

Query: 206 VQG 214
           ++G
Sbjct: 851 IEG 853


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 11  PQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 151
           PQ+ + +QN +  +   +  G P  K V+ +  T        DSDS++S
Sbjct: 781 PQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 164 IHADXGGEAGPYTKVQGLLSY 226
           +H    G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,958
Number of Sequences: 5004
Number of extensions: 56738
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)