Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G19
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       37   0.014
04_03_0649 - 18402976-18403220,18403305-18404499                       36   0.018
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507...    29   2.7  
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    29   3.6  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    28   6.3  
12_02_0292 + 16979550-16980662,16983249-16983731                       27   8.4  
05_03_0191 - 9521496-9521921                                           27   8.4  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 1/150 (0%)
 Frame = +2

Query: 17  NRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADXGGEAG 193
           ++D   +A   +  W+  G P  KLV+GI   GR+W L + D    G P   A  G +  
Sbjct: 253 DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPT--AAAGTKQR 310

Query: 194 PYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSY 373
              ++ G+++Y EI   L       K   +   +D ++    Y +        G  WVS+
Sbjct: 311 KSNQI-GVIAYAEIEEYL-------KSQSVFVTHD-NQSVADYFY-------SGDLWVSF 354

Query: 374 EDPDTAGNKASYVKTKNLGGVSIMDLSMDD 463
           +       K  +V    L G  +  +S DD
Sbjct: 355 DSAVVVQEKVEFVAKSQLLGYFLSTISFDD 384


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 32/143 (22%), Positives = 57/143 (39%)
 Frame = +2

Query: 35  NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQG 214
           +A   +  W+  G P  K+V+GI   GR+W L + +      P+ A    + G  +   G
Sbjct: 260 SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATG 317

Query: 215 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAG 394
            +SY E+   L      G R  +   ++ S    +Y          G  WV+++      
Sbjct: 318 AMSYAEV-QWLAATATRGSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVVA 367

Query: 395 NKASYVKTKNLGGVSIMDLSMDD 463
            K ++     L G  +  ++ DD
Sbjct: 368 EKLAFAARCGLLGYFLWPVNYDD 390


>03_05_1021 -
           29750155-29750220,29750342-29750428,29750614-29750799,
           29750965-29751059,29751179-29751284,29751378-29751452,
           29751548-29751679,29751782-29751961,29752371-29752567,
           29752651-29752906
          Length = 459

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 89  LVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEICAK 244
           LV+G   +  T  L    E+SG+P    D     GP  K+   L++ E+  K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 24  ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 134
           ++Y +PT++ + GF   +    LSLV+A L+  GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 441 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 322
           M T P       +A   A  GS  +T  PPSP   GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


>12_02_0292 + 16979550-16980662,16983249-16983731
          Length = 531

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 82  PQTCPWYQHHWTYVEARFR 138
           P+   W QHHWT    R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523


>05_03_0191 - 9521496-9521921
          Length = 141

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 70  WCAYPQTCPWYQHHWTYVEARFR 138
           W   P+   W++ HWT   AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,299,095
Number of Sequences: 37544
Number of extensions: 387529
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)