Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G19
(588 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 24 0.96
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 23 2.9
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 3.9
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 3.9
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 6.8
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 6.8
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 9.0
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 9.0
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 9.0
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.0
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.0
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 24.2 bits (50), Expect = 0.96
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 50 INYWIQNGAPTHKLVLGIST--TGRTWKLDSDSEISGV 157
+++WI A + ++ LGI+T T T LDS +++ V
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKV 301
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 22.6 bits (46), Expect = 2.9
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +2
Query: 50 INYWIQNGAPTHKLVLGIST 109
+++WI + A + ++ LGI+T
Sbjct: 261 VSFWINHEATSARVALGITT 280
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 22.2 bits (45), Expect = 3.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3
Query: 9 HRRTAILYKTPT 44
H++TAI ++TPT
Sbjct: 279 HKQTAIAFRTPT 290
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 22.2 bits (45), Expect = 3.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3
Query: 9 HRRTAILYKTPT 44
H++TAI ++TPT
Sbjct: 279 HKQTAIAFRTPT 290
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.4 bits (43), Expect = 6.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 357 ASGFLTKILTRPETKLVT*KQRTLAVCPS 443
++ F +K++TRP+T + +AV P+
Sbjct: 1136 STSFDSKVMTRPDTDSENWTPKMMAVEPT 1164
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.4 bits (43), Expect = 6.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = +2
Query: 128 LDSDSEISGVPPIHADXGGEAGPYTKVQGL 217
+ D + G+ P+H G GP +G+
Sbjct: 53 IPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 9.0
Identities = 5/20 (25%), Positives = 13/20 (65%)
Frame = +2
Query: 50 INYWIQNGAPTHKLVLGIST 109
+++W+ A ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 9.0
Identities = 5/20 (25%), Positives = 13/20 (65%)
Frame = +2
Query: 50 INYWIQNGAPTHKLVLGIST 109
+++W+ A ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.0 bits (42), Expect = 9.0
Identities = 5/20 (25%), Positives = 13/20 (65%)
Frame = +2
Query: 50 INYWIQNGAPTHKLVLGIST 109
+++W+ A ++ LG++T
Sbjct: 179 VSFWLNRNATPARVALGVTT 198
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 9.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -2
Query: 203 WYKDQLHHPXRRVSVELRKFHCLNRASTYVQWC 105
WYKD P EL + + +NR + C
Sbjct: 367 WYKDGRQLPGTGRQSELLRLNGINREDRGMYQC 399
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 9.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -2
Query: 203 WYKDQLHHPXRRVSVELRKFHCLNRASTYVQWC 105
WYKD P EL + + +NR + C
Sbjct: 367 WYKDGRQLPGTGRQSELLRLNGINREDRGMYQC 399
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,049
Number of Sequences: 438
Number of extensions: 4020
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -