Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G18
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 30 0.67
12_02_0216 + 15804110-15804284,15804341-15804351 30 0.88
03_05_0517 - 25118232-25118730,25119002-25119273 28 2.7
03_02_0269 + 7001891-7002212,7003598-7004037 28 2.7
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 4.7
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 27 4.7
12_01_0495 - 3935395-3937110 27 8.2
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 27 8.2
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 8.2
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 8.2
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 30.3 bits (65), Expect = 0.67
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 22 NPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 132
+PG +++N+G S GN ++ N PFF SNG
Sbjct: 51 HPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 0.88
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 52 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 174
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 103 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 213
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 238 SHHGREGCRIAWVDNWDD*NRR 173
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 196 YPPKRYDNPLARGGK 240
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 4 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 168
DH+ D + V+ D+S VP D + D + DP + EP+S P
Sbjct: 40 DHSDDSDSAAVNEDDDSAVPEDAD-DETLAGAEDPVLDLREAEVLPSAEPVSAFP 93
>12_01_0495 - 3935395-3937110
Length = 571
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 4 DHNPDYNPGQVHVVDNSGVPSDGNSD--HVVIANPDP 108
DH Y+ HVVD P G D HV +A P P
Sbjct: 342 DHYLGYHSHDAHVVDAEATPEQGYHDDAHVAVA-PAP 377
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 7 HNPDYNPGQVHVVDNSGVPSDG---NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 171
H Y PG V+ + GVP G S V I P P S+ P+ Y+P + PA
Sbjct: 83 HQGAYQPGGVYRAPSPGVPVIGGYARSTPVTIRAPPP---SHSSAPA-PYQPAAAAPA 136
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 40 VVDNSGVPSDGNSDHVVIANPDPFFSQP 123
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 52 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 162
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,370
Number of Sequences: 37544
Number of extensions: 204689
Number of successful extensions: 496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -