Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G17
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   0.60 
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    28   0.60 
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    27   1.8  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   1.8  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   1.8  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.3  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   4.3  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    25   5.6  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    25   7.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.4  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    24   9.8  
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    24   9.8  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    24   9.8  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 284 RPHRWTSTPVGRSSIRLSLSPPVGTPALVSRFPNISNL 397
           RP   +  P+       S  PPV  P+L S+ P++SN+
Sbjct: 367 RPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNI 404


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 452 SLKLWF*IISLSFKLMTVLN*KYLENEKLVLGFPLEDLMKG--VSNFFQPALK 300
           +LKL+  I SL   L  ++  +YL+  KL L F L +L K     N F+ A+K
Sbjct: 322 TLKLYSNIESLPASLKQLIKDEYLQKSKLELSFILGELSKNGDDKNNFELAMK 374


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 192 VLEHVVHSGTDSVEVRNLRNIWQVFSGECF-GTEIVVVVMEEIYFTGSRH 46
           +L HV + GT+SV++   R I Q F  +CF      V  + E +F   RH
Sbjct: 111 ILFHVTYDGTESVDL--ARPIIQEFFLKCFLQNNKSVTPVYESFFNQPRH 158


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 141 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 40
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 246 LLSGGKTESLQDSDHIAGLQRRLEE 320
           +L GGK+ +  D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 163 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 261
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 338 LSPPVGTPALVSRFPNIS 391
           LSP    PA++ RFPN++
Sbjct: 178 LSPTAEAPAILPRFPNVN 195


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 383 LENEKLVLGFPLEDLMKGVSNFFQPALKSSD 291
           ++ EK+V    +  +  G+S  FQP LK+SD
Sbjct: 75  MQVEKVVKCIDVLWVNSGISKSFQPVLKTSD 105


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 129 WQVFSGECFGTEIVVV 82
           W VFSG  +GT I+ +
Sbjct: 87  WAVFSGNMYGTSIMAI 102


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 31  GFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPN 150
           GF D +T  GK  L     +     A    +LP+ P + N
Sbjct: 396 GFNDTVTNLGKKGLKDGTTNTLQIPAVRLPSLPSSPTIKN 435


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 246 LLSGGKTESLQDSDHIAGLQRRLEE 320
           +L GGK     D++H+A +++ LE+
Sbjct: 244 ILRGGKKGPNYDAEHVAAVRKDLEK 268


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 37  GDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPNFNTVGAG 171
           G  +    KVN+F  D  DF+A     K +   P +P   TV AG
Sbjct: 64  GSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDP-MPARTTVAAG 107


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   ATLTKTHIPGFGDKMTAAGKVNL 72
           AT T T   GFGDK + AGK N+
Sbjct: 258 ATSTLTDA-GFGDKSSTAGKHNV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,882
Number of Sequences: 5004
Number of extensions: 42234
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)