Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G17
(461 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 30 1.1
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_37291| Best HMM Match : rve (HMM E-Value=4.8e-19) 28 3.3
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074) 27 7.6
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 27 10.0
SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3) 27 10.0
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 1 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQ-VPNFNTVGAG 171
G+T T IPG G + GK ++ N H S A P VP T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 146 RTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSS 325
++ +S P W +RT L+H + L + L+G+ SS L HRW S VG S
Sbjct: 1083 QSKLMSTPHWNQSARTSLLH------SVCLRYIEVLFGK---SSSL--HRWGSPKVGESP 1131
Query: 326 IRLS 337
R +
Sbjct: 1132 TRFA 1135
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +2
Query: 209 RPPLTPM----SLIVMTTLWGEN*ISSRLRPHRWTSTPVG----RSSIRLSLSPPVGTP 361
+PPL+ + S+ + + W +S +L P R TP+G R+ RL+L+P +P
Sbjct: 807 QPPLSRLRSRISVFPLRSDWNRMSVSDKLDPQRTPRTPLGLKSERTVHRLTLNPSTASP 865
>SB_37291| Best HMM Match : rve (HMM E-Value=4.8e-19)
Length = 214
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 351 TGGLNERRIELLPTGVEVQRCGRSLE 274
T GL ER ++ TGV V GRSL+
Sbjct: 170 TNGLAERLVQSFKTGVNVDLTGRSLQ 195
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 34 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 162
FGDK A + FH ND D S + T+ + ++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632
>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 351 TGGLNERRIELLPTGVEVQRCGRSLEEIQ 265
T GL ER ++ TGV GRSL+ Q
Sbjct: 602 TNGLAERLVQSFKTGVRADLTGRSLQHKQ 630
>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
Length = 532
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 135 SSSSELQHCRCRSGLHVQGQDW 200
SS +LQ C+ +G H+Q +DW
Sbjct: 332 SSRVDLQACKLGTGRHLQRRDW 353
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/44 (27%), Positives = 28/44 (63%)
Frame = -1
Query: 389 KYLENEKLVLGFPLEDLMKGVSNFFQPALKSSDVVGVLKRFSFP 258
KY++++ + + +P +DL + V++F + + + +L+RF FP
Sbjct: 46 KYVQSKHIHV-YPCDDL-RWVASFMKDGKTFEEAIALLRRFHFP 87
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 278 RLRPHRWTSTPVGRSSIRLSLS 343
R++ HRWT TP+ S+ L ++
Sbjct: 959 RVKKHRWTHTPMTGDSLALEIT 980
>SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3)
Length = 335
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 252 RVVITIKDIGVSGGRRCTNLVLEHVVHSGTDSVEVRNLRNIWQVFSGECF 103
R +T K + GR+ NLV + V S + + +L+ +++F EC+
Sbjct: 267 RATLTGKQLWTFRGRQPRNLVEQQSVDSYKEIRNITDLQRAYKLFLKECW 316
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = +1
Query: 34 FGDKMTAAG---KVNLFHNDNHDFSAKAF 111
F ++ T++G KV LFH N+ F+AK+F
Sbjct: 35 FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,827
Number of Sequences: 59808
Number of extensions: 313320
Number of successful extensions: 775
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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