Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G16
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   0.82 
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   5.8  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    25   7.6  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 PYCMDSCQNADHYCPNCNSYLGT 341
           PY +++C N   Y  NCNS L T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 210 TKTHVIALLLCLFLCWPCVCVPYCMDSCQNADHYCPNCNSYLGT 341
           T   +  +++C F      CVP C+ +   AD Y P  N Y GT
Sbjct: 223 TAQDIQTIMICRFFGGYGACVPLCVVAAAFADMY-P--NRYRGT 263


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 232 SSYVCFCAGRVYVYRTVW 285
           S   C CA R+YV+ +V+
Sbjct: 299 SGQTCVCANRIYVHSSVY 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,286
Number of Sequences: 5004
Number of extensions: 40450
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)