Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G15
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23190.1 68416.m02924 lesion inducing protein-related similar...    31   0.43 
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   5.2  
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei...    27   6.9  

>At3g23190.1 68416.m02924 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 216

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +2

Query: 14  LIVFCTYNLFTNVTMSEAFFDE--YDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPS 187
           L +F TY     + + +A      YD+YN D+D+  FT    K    +E  E T   D  
Sbjct: 79  LFIFNTYVGAALLLVYQAILSPILYDFYNRDYDRDHFTVFYTK---FKEFVEETTSAD-G 134

Query: 188 GHSRKIVTKLVNTENNKK 241
           G +  + T +VN E+ +K
Sbjct: 135 GVAMSLYTSVVNEESRQK 152


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 395 AMDVPSISEQGSDPQPLRVSAI 330
           AMD+PS S + SD  P+R S +
Sbjct: 852 AMDIPSPSSEDSDENPIRDSLV 873


>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
           protein-related contains weak similarity to CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 452

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 390 GCSVDL*AGQRPAASSGIRHNVLLSLGNSVI-FLLQAIVVFIHRYIYCLLDFLLFSVFTN 214
           GC   + +GQ  + +S    N ++ LG   I F  Q    F +++ YCL+D+ L    T+
Sbjct: 205 GCGFRI-SGQSVSGTSFNGANGVMGLGRGPISFASQLGRRFGNKFSYCLMDYTLSPPPTS 263

Query: 213 FVTI 202
           ++ I
Sbjct: 264 YLII 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,294
Number of Sequences: 28952
Number of extensions: 174777
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)