Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G14
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 300 7e-82
07_01_0756 + 5819367-5820038,5820847-5821005 297 7e-81
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 101 4e-22
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 36 0.022
05_01_0214 - 1615519-1616775 34 0.12
09_04_0226 - 15859439-15860377 32 0.37
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 32 0.37
03_05_0292 + 22846273-22846377,22847161-22847823 31 1.1
03_02_0261 - 6933962-6934513 31 1.1
09_04_0377 + 17086775-17088310 30 1.5
03_01_0031 + 292335-292844 30 1.5
10_07_0161 - 13674631-13675433,13675793-13675862 29 4.5
06_03_0892 - 25713502-25714125,25714309-25715199 28 6.0
11_01_0395 + 2999855-2999920,3000605-3002191 28 7.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 300 bits (736), Expect = 7e-82
Identities = 134/179 (74%), Positives = 163/179 (91%)
Frame = +2
Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 325
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 326 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 505
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 506 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
IG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST T
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKT 215
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 297 bits (728), Expect = 7e-81
Identities = 134/179 (74%), Positives = 162/179 (90%)
Frame = +2
Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 325
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 326 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 505
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 506 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST T
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKT 218
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 101 bits (243), Expect = 4e-22
Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Frame = +2
Query: 365 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 541
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 542 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST T
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKT 103
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 293 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 472
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 473 LPV 481
+ V
Sbjct: 231 VTV 233
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 46 WRFP-RRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRP 156
W F RR WIPW +R+ + WS S T R W Q RP
Sbjct: 184 WSFEWRRGWIPWEARRASKSAWSQSSTGTRKW-MQYRP 220
>05_01_0214 - 1615519-1616775
Length = 418
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 143 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVH 39
HGHG DHDH G D HH G+ H H
Sbjct: 190 HGHGHGHSHDHDH-GGSDHDHHHHEDQEHGHVHHH 223
>09_04_0226 - 15859439-15860377
Length = 312
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 574 PRSPWYWNCVCPCSQEVASNGWCSGLLHFCSW--IHW 678
PR Y+ C+ PC SN + SG+ + SW + W
Sbjct: 187 PRRDLYYGCMVPCDYVRGSNEYMSGMGYLLSWDLVEW 223
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 40 WTWRFPRRLWIPWWRQRSWRP 102
W WR P RL W R RSW P
Sbjct: 140 WLWRRPSRLLSKWRRGRSWAP 160
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 82 RQRSWRPTWSWSRTRAR 132
R+RSWR WSW R R R
Sbjct: 157 RRRSWRRQWSWRRRRRR 173
>03_02_0261 - 6933962-6934513
Length = 183
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 82 RQRSWRPTWSWSRTRAR 132
R+RSWR WSW R R R
Sbjct: 116 RRRSWRRQWSWRRRRRR 132
>09_04_0377 + 17086775-17088310
Length = 511
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 46 WRFPRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRPERVGASHQAWS 189
+R RR W P+ R R W+R R P P +G GA AWS
Sbjct: 62 YRDRRRQWSPYHRDRGRDVEREWARDRDHPAPRRGGG---GAGAGAWS 106
>03_01_0031 + 292335-292844
Length = 169
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 67 WIPWWRQRSWRPTWSWSR 120
W W R+R WR W W R
Sbjct: 39 WRRWRRRRGWRRRWGWQR 56
>10_07_0161 - 13674631-13675433,13675793-13675862
Length = 290
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +1
Query: 43 TWRFPRRLWI---PWWRQR-SWRPTWSWSRTRARPWPWQGRPERVGASHQAWS 189
+WR P W+ PW Q+ +WRP S W G P G SH W+
Sbjct: 229 SWR-PAGPWVCFNPWPAQQLAWRPPPPPSPLSWSSWAGSGGPLFPGTSHLRWA 280
>06_03_0892 - 25713502-25714125,25714309-25715199
Length = 504
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 173 LAPTLSGLPCHGHGRARVRDHDHVGRHDLCRHHG 72
L P+ GLP GH V HV DL R HG
Sbjct: 35 LPPSPWGLPVIGHLHHLVGALPHVAMRDLARRHG 68
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 233 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 352
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,140,917
Number of Sequences: 37544
Number of extensions: 434052
Number of successful extensions: 1321
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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