Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G14
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              329   1e-90
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)                   32   0.37 
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.86 
SB_59101| Best HMM Match : PT (HMM E-Value=0.026)                      30   1.5  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   3.5  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     29   3.5  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   3.5  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   3.5  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   3.5  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   4.6  
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   6.1  
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.0  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  329 bits (808), Expect = 1e-90
 Identities = 154/173 (89%), Positives = 162/173 (93%)
 Frame = +2

Query: 164 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 343
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 344 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHT 523
           QRTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHT
Sbjct: 68  QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127

Query: 524 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
           VPCKVTGKCGS  VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T T
Sbjct: 128 VPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTAT 180


>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
          Length = 733

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 374 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKC 550
           IGD+ G   + V+ +K   +   G++    L+  P +RRG  G++  KPH+ P  ++ + 
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195

Query: 551 GS 556
           GS
Sbjct: 196 GS 197


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -2

Query: 441  RIAVATSLLHFTPKPMCPLLSPIATNALKRVR*PARVCFCTGMIFRTSSLSEGPRKKSMI 262
            R ++ T+     P P+CP  S  ++N LKR R PARV        R  SL    +   + 
Sbjct: 1346 RASLKTTPTSSVPSPLCPSSSSKSSNQLKRSR-PARVPSGCESKRRKLSLKLKSKSTELS 1404

Query: 261  SNSLMGRE 238
               + GRE
Sbjct: 1405 GEQIGGRE 1412


>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
          Length = 386

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 79  WRQRSWRPTWSWSRTRARPW------PWQGRPERVGASHQAWSPCP 198
           W+Q + +P   W +  ++PW      PWQ  P R  ++   WSP P
Sbjct: 316 WQQGNDQP---WQQNNSQPWQQNIVQPWQQMPTRSLSNATPWSPQP 358


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 293 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 406
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
 Frame = +1

Query: 40   WTWRFPRRLWIPW--------WRQRSWRPTWS---WSRTRARPWPWQGR 153
            WT R+ R+ W  W        W++R    TWS   + R R   +PW  R
Sbjct: 965  WTERWHRKTWDTWNEGPTWSKWQRRPTGRTWSHGYFRRDRTNRFPWTAR 1013


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 293 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 406
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 293  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 406
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 293 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 406
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 52   FPRRLWIPW--WRQRSW-RPTWSWSRTRARPWPW 144
            +PR LW PW  W +  W R    WS      WPW
Sbjct: 1616 WPRSLW-PWSFWSRSLWPRSLLPWSLWPRSLWPW 1648


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 293 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 406
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 293 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 406
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +2

Query: 473  LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 592
            LP   GYW N  G   P   PC V   C +   +  P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396


>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 137 HGRARVRDHDHVGRHDLCRHHGIQS-RRGNRHVHR--LELRPPLLND 6
           H R R   H H   +    HH  QS +  +RH HR  L+ +  L+ND
Sbjct: 3   HKRHRHSHHHHYPHYQYNHHHDQQSHQHHDRHHHREVLDHKTDLMND 49


>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 467 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 607
           +V    RG+W   + + H + C V  +CG +   L  AP    +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 341 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 430
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +2

Query: 467 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 646
           S++  R   +G K  +P  + C V G  GS++ RL  A    G +S+ +   + +   + 
Sbjct: 472 SIISRRSSSFGRKGSRPSCL-CSVAGAQGSISSRLCSAISRQGSISSRLCSAISRQGSIS 530

Query: 647 DCYTSARGSTGT 682
               SA    G+
Sbjct: 531 SRLCSAISRQGS 542


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 100 PTWS-WSRTRARPW-PWQGRPERVGAS 174
           PTWS W+ TRA PW PW       G S
Sbjct: 382 PTWSSWTNTRA-PWSPWSAPTRPPGGS 407


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -3

Query: 164  TLSGLPCHGHGRARVRDHDHVGRHDLCRHHGIQS-RRGNRHVHR--LELRPPLLND 6
            TL G     H R R   H H   +    HH  QS +  + H HR  L+ +  L+ND
Sbjct: 937  TLPGNYPESHKRHRHSHHHHYQHYQYNHHHDHQSHQHHDSHHHREVLDHKTDLMND 992


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,510,782
Number of Sequences: 59808
Number of extensions: 475097
Number of successful extensions: 1354
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)