Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G14
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 299 9e-82
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.3
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.4
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 5.4
Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine r... 28 7.1
Z81579-6|CAB04652.3| 347|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 27 9.4
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 9.4
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 299 bits (735), Expect = 9e-82
Identities = 144/178 (80%), Positives = 156/178 (87%)
Frame = +2
Query: 149 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 328
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 329 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI 508
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 509 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
G PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST T
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTAT 228
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 545 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 676
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 545 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 676
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = -3
Query: 143 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVHRLELRPPLLNDH 3
HGH H H G H HHG G H H P + H
Sbjct: 516 HGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGH 563
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -3
Query: 143 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRH 45
H HG V H H G H HHG G H
Sbjct: 646 HHHGSHGVH-HGHHGTHHSLAHHGHHGGHGTHH 677
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -3
Query: 143 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLE 30
HGH DH H HD HHG S + H H E
Sbjct: 99 HGHSHDEEEDHHHGHAHD---HHG-HSHEDHGHSHGAE 132
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 316 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 411
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 316 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 411
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 316 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 411
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical
protein C09H10.8 protein.
Length = 344
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 489 PLRTGRTDNLASMMAPRIAVATSLLHFTPKPMCPLLSPI 373
PLR T+++ SM + R + + S HF M P ++P+
Sbjct: 191 PLRLSITNSIISMASMRSSRSRSASHFLEPNMSPAIAPM 229
>AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 67 protein.
Length = 324
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 422 PCCTSHPNQCVHCYH 378
PC PN C+HCYH
Sbjct: 80 PCKYIGPNFCLHCYH 94
>Z81579-6|CAB04652.3| 347|Caenorhabditis elegans Hypothetical
protein R13H4.7 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 12/34 (35%)
Frame = +1
Query: 40 WTWRFPRRLWIPWWRQRSWRPTWSWSRTRARPWP 141
W W L WW +WSR A WP
Sbjct: 76 WRWNIHIYLDFTWWAMVYHYTVIAWSRLAAVQWP 109
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 354 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 178
R R P + T R+SS+ P S +S + R + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 177 VTGT 166
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 354 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 178
R R P + T R+SS+ P S +S + R + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 177 VTGT 166
+ T
Sbjct: 582 QSNT 585
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 410 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 538
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,370,239
Number of Sequences: 27780
Number of extensions: 332703
Number of successful extensions: 1092
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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