Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G14
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 315 2e-86
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 309 1e-84
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 309 1e-84
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 309 1e-84
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 309 1e-84
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 307 4e-84
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 70 2e-12
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 34 0.076
At1g12170.1 68414.m01409 F-box family protein contains F-box dom... 31 0.53
At3g01450.1 68416.m00069 expressed protein 29 2.8
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.8
At1g07220.1 68414.m00768 expressed protein 29 3.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.0
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 6.6
At3g63100.1 68416.m07087 glycine-rich protein 28 6.6
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.6
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 6.6
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 6.6
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 27 8.7
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 315 bits (774), Expect = 2e-86
Identities = 140/177 (79%), Positives = 165/177 (93%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 331
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 332 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 511
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 512 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 217
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 309 bits (759), Expect = 1e-84
Identities = 140/177 (79%), Positives = 161/177 (90%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 331
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 332 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 511
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 512 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 309 bits (759), Expect = 1e-84
Identities = 140/177 (79%), Positives = 161/177 (90%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 331
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 332 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 511
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 512 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 309 bits (759), Expect = 1e-84
Identities = 140/177 (79%), Positives = 161/177 (90%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 331
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 332 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 511
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 512 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 309 bits (759), Expect = 1e-84
Identities = 140/177 (79%), Positives = 161/177 (90%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 331
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 332 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 511
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 512 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 307 bits (754), Expect = 4e-84
Identities = 138/177 (77%), Positives = 161/177 (90%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 331
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 332 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 511
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 512 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 682
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 226
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/126 (30%), Positives = 70/126 (55%)
Frame = +2
Query: 296 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 475
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 476 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCY 655
V + K T P + G G+ V L PA GTG+++ + +L+MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 261
Query: 656 TSARGS 673
GS
Sbjct: 262 GKQLGS 267
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 34.3 bits (75), Expect = 0.076
Identities = 30/124 (24%), Positives = 55/124 (44%)
Frame = +2
Query: 302 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 481
V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421
Query: 482 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 661
R + HT+ + + L PAP TG+ + V K +L +AG ++ +
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSK 474
Query: 662 ARGS 673
GS
Sbjct: 475 VIGS 478
>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 31.5 bits (68), Expect = 0.53
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 40 WTWRFPRRLWIPWWRQRSW 96
W+WR +W PW RQ W
Sbjct: 107 WSWRKKAAIWNPWLRQTKW 125
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 525 TV*GFPILLPQ*PLRTGRTDNLASMMAPRIAVATSLLHFTPKPMCPLLSPIATNALKRVR 346
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 345 *PARVCF 325
A CF
Sbjct: 218 AKASTCF 224
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -2
Query: 504 LLPQ*PLRTGRTDNLASMMAPRIAVATSLLHFTPKPMCPLLSPIATNALKRVR*PARVCF 325
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 106 WSWSRTRARPWPWQGRPERVGASHQAW 186
W WS T RPW + + G+ ++W
Sbjct: 235 WGWSETNLRPWEEEFGDIKQGSRRRSW 261
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 362 AFVAIGDNNGHIGLGVKCSKE 424
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -2
Query: 456 SMMAPRIAVATSLLHFTPKPMCPLLSPIATNALKRVR*PARVCFCTGMIFRTSSLSEGPR 277
S+ P AT+ FT P L+ + ++ P R FC+G+ +S + PR
Sbjct: 11 SIRIPSTTTATAAFTFTRPP----LNYVCVVGVRVF--PTRKVFCSGVNGGSSVTKKKPR 64
Query: 276 KKSMISNSL 250
+KS +S+ L
Sbjct: 65 RKSNVSDKL 73
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 143 HGHGRARV-RDHDHVGRHDLCRHHGIQSRRGNR 48
HGHG R RDH H R HG RG+R
Sbjct: 102 HGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHR 134
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 518 HTVPCKVTGKCGSVTVRL 571
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 458 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 637
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 638 GVQ 646
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 458 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 637
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 638 GVQ 646
GV+
Sbjct: 257 GVE 259
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 143 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNR 48
HG R R RD DH D R G R R
Sbjct: 257 HGRDRDRERDRDHYRERDRDRERGRDRERDRR 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,674
Number of Sequences: 28952
Number of extensions: 321511
Number of successful extensions: 954
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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