Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G13
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    64   6e-11
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    64   6e-11
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   0.88 
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z49074-3|CAA88894.1|  176|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z48583-6|CAA88474.1|  176|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    29   3.5  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   3.5  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       29   3.5  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       29   3.5  
Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical pr...    28   6.2  
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        27   8.2  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    27   8.2  
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    27   8.2  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    27   8.2  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
 Frame = +2

Query: 11  ICLPDAGEVFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRC-NDLLRYTELG 187
           ICLP    V+   + CV +GWG         +A  L+   + ++    C N    Y+ + 
Sbjct: 137 ICLPSKDFVYTPGRQCVVSGWGSMGL----RYAERLQAALIPIINRFDCVNSSQIYSSMS 192

Query: 188 ARYNLHSSFVCAGGEEGK-DMCTGDGGGPLACPISNNRYKXXXXXXXXXXCGQKNVPGVY 364
                 S+F CAG  EG  D C GD GGP AC   +  +           C QK  PG+Y
Sbjct: 193 -----RSAF-CAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIY 246

Query: 365 ASLAALRSWVDEIM 406
             +A   SW+  I+
Sbjct: 247 TMVAPYLSWISAII 260


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
 Frame = +2

Query: 11  ICLPDAGEVFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRCNDLLRYTELGA 190
           ICLP    V  +++ CV  GWG    G     A  L++I + ++    C+ L  Y     
Sbjct: 164 ICLPSLPAV--ENRLCVVTGWGSTIEGSSLS-APTLREIHVPLLSTLFCSSLPNYI---G 217

Query: 191 RYNLHSSFVCAGGEEGK-DMCTGDGGGPLACPISNNRYKXXXXXXXXXXCGQKNVPGVYA 367
           R +L  S +CAG   GK D C GD GGPL C   +  ++          C +  +PGVY 
Sbjct: 218 RIHL-PSMLCAGYSYGKIDSCQGDSGGPLMC-ARDGHWELTGVVSWGIGCARPGMPGVYG 275

Query: 368 SLAALRSWVD-EIMRL 412
           ++ +  +W++ E+ RL
Sbjct: 276 NVHSASTWINLEMNRL 291


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +2

Query: 5   NTICLPDAGEV-FDDSKNCVANGWGKNRF-GKDDEFAVVLKKIELDMVEHSRCNDLLRYT 178
           N  CLP   EV      N  + GWG +   G D+    +++ + L     + C +     
Sbjct: 194 NYACLPFLPEVNIQSGANVTSFGWGSDPGKGFDNAAFPMIQVLTLATETLATCEE----- 248

Query: 179 ELGARYNLHSSFVCAGGEEGKDMCTGDGGGPL 274
             G      S   C   EE K++C+GD GG L
Sbjct: 249 NWGTSIPFDS--FCTAEEEDKNVCSGDSGGGL 278


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 265 WSTGLSHQQ*QVQAGXXXXXXXXXXXXXXXXXICIAGSPSLLGRRDNALNRLRNVFLYRL 444
           + T L  Q+ QV  G                 +CI  +  +L  RD +L  L +  + RL
Sbjct: 259 FKTLLQKQEVQVLGGYAPVLQLKTNKDIEYASLCIVHNYVILAERDESLIPLISSHITRL 318

Query: 445 NVFFSY 462
           +VF+ Y
Sbjct: 319 SVFYGY 324


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 176 CT*VDHYNGYAPPYPVQSSLVLPQIHHPYRNDSSPSRWRHSFYYHRRLR 30
           CT ++ Y G      V  +  L +  H Y++      WR  F+++ + R
Sbjct: 305 CTCLEGYAGNGYNCTVSKNSCLDKFDHDYKDTCGNENWRPHFFFNHQTR 353


>Z49074-3|CAA88894.1|  176|Caenorhabditis elegans Hypothetical
           protein ZK971.1 protein.
          Length = 176

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 370 AGSPSLLGR-RDNALNRLRNVFLYRLNVFFSY 462
           A SP LL R  D+A+  L N+  + +N FF+Y
Sbjct: 17  ARSPCLLERLADSAIKLLGNIITHTMNAFFNY 48


>Z48583-6|CAA88474.1|  176|Caenorhabditis elegans Hypothetical
           protein ZK971.1 protein.
          Length = 176

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 370 AGSPSLLGR-RDNALNRLRNVFLYRLNVFFSY 462
           A SP LL R  D+A+  L N+  + +N FF+Y
Sbjct: 17  ARSPCLLERLADSAIKLLGNIITHTMNAFFNY 48


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 12/147 (8%)
 Frame = +2

Query: 2   INTICLP-DAGEVFDDSKNCVANGWGKNRFGKDDEF------AVVLKKIELDMVEHSRCN 160
           I  +CL  D  ++    KN V  G+G    G+D         +  L+   + ++    C 
Sbjct: 139 IKPVCLVHDDSKLLKQYKNGVVIGYGLT-LGEDSSGEPKLINSQTLQSTSVPIISDDDCV 197

Query: 161 DLLRYTELGARYNLHSSFVCAGGEEGKDMCTGDGGGPLACPISNNRY-----KXXXXXXX 325
              R+  L     +    +CAG         GD GGPL    SN  Y             
Sbjct: 198 KTWRFLSL-LSVKITGYQICAGAYL-HGTAPGDSGGPLLIHKSNGEYVQIGITSYGADGL 255

Query: 326 XXXCGQKNVPGVYASLAALRSWVDEIM 406
                Q   PGVY  ++    W+  ++
Sbjct: 256 DGVIDQGKFPGVYTRISKYVPWIQGVI 282


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 267 PPPSPVHMSFPSSPPAQTKELCRLYLAPSSVYLSRSLQ 154
           PPP P  M  P  PP  +   C+ Y AP+ V+   ++Q
Sbjct: 66  PPPPPPPMCPPPPPPMPSYSPCQSY-APAPVFNQYAMQ 102


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 176 CT*VDHYNGYAPPYPVQSSLVLPQIHHPYRNDSSPSRWRHSFYYHRRLR 30
           CT ++ Y G      V  +  L +  H Y++      WR  F+++ + R
Sbjct: 305 CTCLEGYAGNGYNCTVSKNSCLDKFDHDYKDTCGNENWRPHFFFNHQTR 353


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 176 CT*VDHYNGYAPPYPVQSSLVLPQIHHPYRNDSSPSRWRHSFYYHRRLR 30
           CT ++ Y G      V  +  L +  H Y++      WR  F+++ + R
Sbjct: 305 CTCLEGYAGNGYNCTVSKNSCLDKFDHDYKDTCGNENWRPHFFFNHQTR 353


>Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC455.4 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 47  SKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRCNDLLRYTELGARYNLHSSFVCAG 226
           S+ C+ + W  + +  D   A++L K      EH  C  +   TEL   Y+L S      
Sbjct: 90  SQGCMRDAWHSSWYQSDAGAAILLSKYLFPAFEH-MCRKMFEDTEL--HYDLKSRQFDVV 146

Query: 227 GEEGKDMC 250
             E  D C
Sbjct: 147 LSEAFDFC 154


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 146 APPYPVQSSLVLPQIHHPYRNDSS 75
           APP P + S    Q HHPY N +S
Sbjct: 556 APPLPPRLSASEHQPHHPYTNTNS 579


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 146 APPYPVQSSLVLPQIHHPYRNDSS 75
           APP P + S    Q HHPY N +S
Sbjct: 556 APPLPPRLSASEHQPHHPYTNTNS 579


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 146 APPYPVQSSLVLPQIHHPYRNDSS 75
           APP P + S    Q HHPY N +S
Sbjct: 539 APPLPPRLSASEHQPHHPYTNTNS 562


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 146 APPYPVQSSLVLPQIHHPYRNDSS 75
           APP P + S    Q HHPY N +S
Sbjct: 497 APPLPPRLSASEHQPHHPYTNTNS 520


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 101 HHPYRNDSSPSRWRHSFYYHRRLRP 27
           HH + +  SPSR  H  ++H   RP
Sbjct: 401 HHHHHDGRSPSRHGHHHHHHHGCRP 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,297,473
Number of Sequences: 27780
Number of extensions: 274180
Number of successful extensions: 955
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)