Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G13
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   1.1  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   1.9  
At2g02870.1 68415.m00237 kelch repeat-containing F-box family pr...    29   1.9  
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ...    29   3.3  
At1g11020.1 68414.m01264 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At5g45180.1 68418.m05546 flavin-containing monooxygenase family ...    28   4.3  
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    27   7.6  
At4g18150.1 68417.m02697 hypothetical protein                          27   7.6  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 267 PPPSPVHMSFPSSPPA 220
           PPPSPVH S P  PP+
Sbjct: 682 PPPSPVHYSSPPPPPS 697


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 267 PPPSPVHMSFPSSPP 223
           PPPSP H S P SPP
Sbjct: 770 PPPSPAHYSPPPSPP 784


>At2g02870.1 68415.m00237 kelch repeat-containing F-box family
           protein weak similarity to Kelch-like protein 5
           (Swiss-Prot:Q96PQ7) [Homo sapiens]; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 467

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 35  VFDDSKNCVANGWGKNRFGKDDEFAVVLKKIELDMVEHSRCNDLLRYTELGARYNLHSS- 211
           VF  S+   +N      + +DD+  +   K  L++V   R    L+       Y+  SS 
Sbjct: 15  VFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVVGEVRQTKSLKLMGFSIIYDSDSSD 74

Query: 212 FVCAGGEEGKDMCTGDG 262
           +  +GGEE  D   GDG
Sbjct: 75  YSLSGGEEQADAAIGDG 91


>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
           profile PF02453: Reticulon
          Length = 457

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -2

Query: 306 SLYLLLLMGQASG--PPPSPVHMSFPSSPPAQTKELCRLYLAPSSVYLSRS 160
           SL L+LL  + +   P PSPV +S PSS P   +E+  L L+PS +  SR+
Sbjct: 34  SLDLVLLSPKNNNGTPYPSPVSLSSPSS-PVTLREI--LLLSPSPLRKSRT 81


>At1g11020.1 68414.m01264 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 321

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 394 DPGAKGCQRCIYSWHVL 344
           DP   GCQ C Y W VL
Sbjct: 220 DPRMAGCQNCCYGWGVL 236


>At5g45180.1 68418.m05546 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to SP|P31513
           Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
           1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
           (FMO 3) {Homo sapiens}; contains Pfam profile PF00743:
           Flavin-binding monooxygenase-like
          Length = 453

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 219 APEGRREKTCARVMAVVHWLVP 284
           A +G+  KTC  V+   HW++P
Sbjct: 222 ANQGKEGKTCTMVVRTPHWVIP 243


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 282 GQASGPPPSPVHMSFPSSPPA 220
           G+A+ PPPSP     P+SPPA
Sbjct: 290 GEATSPPPSPT----PNSPPA 306


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 161 HY--NGYAPPYPVQSSLVLPQIHHPYRNDSS 75
           HY  +GY  PY  Q+ + L  +HH Y+   +
Sbjct: 722 HYGGHGYVSPYHSQAVMSLEHLHHQYQQQQN 752


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,496
Number of Sequences: 28952
Number of extensions: 253985
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)