Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G12
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 216 1e-56
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 214 4e-56
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 213 1e-55
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At2g39180.1 68415.m04812 protein kinase family protein contains ... 30 1.2
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 5.0
At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2) ident... 28 6.6
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 8.7
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 8.7
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 8.7
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 216 bits (527), Expect = 1e-56
Identities = 100/158 (63%), Positives = 119/158 (75%)
Frame = -2
Query: 666 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 487
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 486 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 307
+R R EA+RKGRH G+GKR+GT AR+P K LW R +KKIDRH+Y
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120
Query: 306 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 193
H +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 214 bits (523), Expect = 4e-56
Identities = 99/158 (62%), Positives = 120/158 (75%)
Frame = -2
Query: 666 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 487
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 486 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 307
+R R+ A+RKGRH G+GKR+GT AR+P K LW R KKIDRH+Y
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120
Query: 306 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 193
H +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 213 bits (519), Expect = 1e-55
Identities = 99/158 (62%), Positives = 118/158 (74%)
Frame = -2
Query: 666 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 487
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 486 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 307
+R RK A+ KGRH G+GKR+GT AR+P K LW R KKID+H+Y
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 306 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 193
H +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = -2
Query: 330 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 220
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At2g39180.1 68415.m04812 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 776
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +3
Query: 138 CAPRGACGLPSPCCGAPLLGH*AXXXXXXXXXXCGCTP*GHACS*THYPSPSCTRNGRDA 317
C+PRG CG A +L C G +C ++PS +C N
Sbjct: 336 CSPRGNCGDGWFAFNASILKESELTSLCSFHNLNICLRCGISCLEGYFPSSTCNPNADRV 395
Query: 318 CLSSSLFCI*AAAYG 362
C SL C ++ YG
Sbjct: 396 CTPCSL-CQNSSCYG 409
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 528 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 409
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2)
identical to SP|Q9M9W8 Phospholipase D p2 (EC 3.1.4.4)
(AtPLDp2) (Phospholipase D2 PHOX and PX containing
domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis
thaliana}; similar to phospholipase D GB:BAA24577 from
[Rattus norvegicus]; contains Pfam profile: PF00614
phospholipase D, PF00169 PH domain, PF00787 PX domain
Length = 1046
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 481 TSAGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIKPHLF 609
TS G + WF+D T + + + + F+ W+ P L+
Sbjct: 359 TSDGSQAQWFVDGHTAFEAIAFAIQNATSEIFMTGWWLCPELY 401
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 492 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 385
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 333 AKKIDRHLYHSLYMKAKGNVFKNKRVL 253
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 528 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 415
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,291,222
Number of Sequences: 28952
Number of extensions: 248751
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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