Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G11
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   171   8e-44
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    29   0.46 
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    29   0.80 
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   3.2  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.3  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   9.9  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   9.9  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  171 bits (416), Expect = 8e-44
 Identities = 81/142 (57%), Positives = 107/142 (75%), Gaps = 1/142 (0%)
 Frame = +3

Query: 141 REIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHET 317
           RE+E+   KK+I+++VP P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  ++
Sbjct: 49  REVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKS 108

Query: 318 RVAYKQKRPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEH 497
           RV   QKRPRSRTLT+V++A+LED+VFP EI+GKR R   DG + IKV LD     T+++
Sbjct: 109 RVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDY 166

Query: 498 KVDTFQSVYEKLTGREVTFESP 563
           K+ +F SVY KLTG+ VTFE P
Sbjct: 167 KLGSFSSVYHKLTGKNVTFEFP 188


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 351 RTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTF-QSVYE 527
           ++L + YD + EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621

Query: 528 KLTGREVTFESP 563
           + T    +F+ P
Sbjct: 622 QSTKSTASFQLP 633


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +3

Query: 234 RELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQKRPRSRTLTSVYDAVLEDLVFPAEIV 413
           ++LEK+F G       +  + PK     +  YK    RSR L   + A + + VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166

Query: 414 GKRIRV 431
           G  IR+
Sbjct: 167 GVDIRL 172


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 177 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 269
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 461 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 327
           H D +  ++  +DA  F+N+  +   + +   G+IYRS CP    F F+
Sbjct: 36  HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
 Frame = +3

Query: 117 VNCTLPRPREIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKIL 296
           V C L R   + +H  + +I    +P  +A+++I +++ + L+K +    + F       
Sbjct: 189 VACLLLR-LPLTIHKLEVLIRKNIIPYYRAYKQIPLKIFKRLQKNYVRMLIPFHYPTYQR 247

Query: 297 PKPSHETRV-----AYKQKRPRSRTLTSVYDAVLEDLVFPAEIVGKRIRV-KLDGSQLIK 458
            + +  T V      Y+ K P       +++ ++    FP EI     R+  L  SQ   
Sbjct: 248 IQSAVLTLVDVLVSKYELKVPPPNEPLILFE-LINSFFFPLEIFIPASRLLNLVHSQ--- 303

Query: 459 VHLD*NQQTTIEHKVDTFQSVYEKLTGREV 548
           + L        + K+ + QS++EKL+  EV
Sbjct: 304 ISLQGTSSDNYQSKIRSAQSIHEKLSDAEV 333


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +2

Query: 32  IEPDTFETSISQALVELE-------TNSDLKAQSGGELYITKAKG 145
           I+PD FE  ++QA + LE        NS+ K  +   +YI K KG
Sbjct: 214 IQPDAFEHLLNQAGLVLEYSIEPQVNNSEYKNFAKRTMYIYKKKG 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,527
Number of Sequences: 5004
Number of extensions: 57353
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)