Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G11
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 152 2e-37
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 151 4e-37
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 2e-13
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 3.3
02_05_0849 + 32202610-32202880,32204234-32205711,32205993-322061... 29 3.3
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109... 28 5.9
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 28 7.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 152 bits (369), Expect = 2e-37
Identities = 72/135 (53%), Positives = 103/135 (76%)
Frame = +3
Query: 159 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQK 338
N+K+++I+VP KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +
Sbjct: 57 NRKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----Q 112
Query: 339 RPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQS 518
RPR+RTLT+V+D +LED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +
Sbjct: 113 RPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSA 172
Query: 519 VYEKLTGREVTFESP 563
VY +L G++V FE P
Sbjct: 173 VYRRLCGKDVAFEYP 187
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 11 KILKAGAIEPDTFETSISQALVELET-NSDLKAQSGGELYITKA 139
KI K +EP FE S++QA +LE N +LK++ +LYI A
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSEL-KDLYINNA 49
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 151 bits (367), Expect = 4e-37
Identities = 72/135 (53%), Positives = 100/135 (74%)
Frame = +3
Query: 159 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQK 338
N+K++IIYVP KA++KI +RLVRELEKKFSGK VV V R+I+ P + V
Sbjct: 70 NRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV---- 125
Query: 339 RPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQS 518
RPR+RTLT+V+D +LED+V+PAEIVGKR+R LDG +++K+ LD ++ E+K+DTF S
Sbjct: 126 RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSS 185
Query: 519 VYEKLTGREVTFESP 563
VY +L G++V F+ P
Sbjct: 186 VYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.9 bits (171), Expect = 2e-13
Identities = 39/86 (45%), Positives = 58/86 (67%)
Frame = +3
Query: 159 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQK 338
N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +P ++ +
Sbjct: 42 NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH--- 97
Query: 339 RPRSRTLTSVYDAVLEDLVFPAEIVG 416
PR+RTL +V+D +LED+V ++G
Sbjct: 98 HPRTRTLITVHDGILEDVVSQLRLLG 123
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 342 PRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIK 458
P +RTLT+ +D +L+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_05_0849 +
32202610-32202880,32204234-32205711,32205993-32206143,
32206378-32206559
Length = 693
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 237 ELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQKRPRSRTLTSVYDAVLEDLV 395
+++KK+S +H G R + +PSHE K K+ + L +Y + D++
Sbjct: 452 QIQKKYS-EHPTVDGTRVEVYQPSHEEYQRSKNKKHNMKALAEIYLLSMTDVL 503
>07_01_0154 -
1094256-1094672,1094954-1094977,1095867-1095891,
1096014-1096304,1096391-1096470,1096953-1097052,
1097143-1097204,1097650-1097750,1097940-1098117,
1098298-1098924,1099014-1099100,1099804-1099905,
1100265-1100348,1100580-1100657
Length = 751
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +3
Query: 123 CTLPRPREIELHNKKSIIIYVPMPKLKAFQKIQ-----IRLVRELEKKFSGKHVV 272
C L R +E ++K + Y P P LK+F +Q I LV ++E +G +V
Sbjct: 570 CLLSLKRTLEDLHRKGLFPYNPKPLLKSFWLLQLGQARIDLVSQVESHRAGAEIV 624
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 393 VFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHK 500
+FPA I G + KLD ++L K H D + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,080,897
Number of Sequences: 37544
Number of extensions: 404518
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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