Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G11
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               98   6e-31
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)                    28   6.0  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 98.3 bits (234), Expect(2) = 6e-31
 Identities = 46/70 (65%), Positives = 60/70 (85%)
 Frame = +3

Query: 141 REIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETR 320
           +EI++  KK+III+VP+P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ ++R
Sbjct: 52  KEIDVGGKKAIIIFVPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR 111

Query: 321 VAYKQKRPRS 350
              KQKRPRS
Sbjct: 112 -NQKQKRPRS 120



 Score = 54.0 bits (124), Expect(2) = 6e-31
 Identities = 22/34 (64%), Positives = 29/34 (85%)
 Frame = +3

Query: 462 HLD*NQQTTIEHKVDTFQSVYEKLTGREVTFESP 563
           HLD  QQTTI+HK++TF +VY+KLTG++V FE P
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = +2

Query: 5   STKILKAGAIEPDTFETSISQALVELETNSDLKAQSGGELYITKAK 142
           S KI+K      + FE  ISQA++ELE NSD+KAQ   ELYI+ AK
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQL-RELYISSAK 52


>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 202 RHSKRSKSGLSVS*KRSSAVSMLCS 276
           RH  RS+S L +  K+S AV++LCS
Sbjct: 574 RHRSRSRSRLEIVSKKSPAVNVLCS 598


>SB_32713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 431 EARWLTTHQSASRLEPTDYY 490
           E+R  TTHQ +S   PTDYY
Sbjct: 152 ESRTSTTHQKSSLRSPTDYY 171


>SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 636 LELLLHVLQFDFYRKIASKFTSKVRGTR-KSLR 541
           + L + VL F F + I  KF SKV+ +R KSLR
Sbjct: 310 ITLYVRVLSFSFAKDIIQKFKSKVKLSRAKSLR 342


>SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)
          Length = 598

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
 Frame = +3

Query: 216 IQIRLVRELEKKFSGKH--------VVFVGDRKILPKPSH---ETRVAYKQKR 341
           +++R++   EKK   KH        V+F  +RK+L K SH   E +V + Q+R
Sbjct: 143 VEVRVIFTKEKKLLTKHSHDLLEVQVIFTQERKLLTKHSHDLLEVQVIFTQER 195


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 120 NCTLPRPREIELHNKKSIIIYVPMP 194
           NC L +P E+ +HN  +I+ Y  +P
Sbjct: 284 NCELTKPGELYVHNGVNIVGYTDLP 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,649,857
Number of Sequences: 59808
Number of extensions: 457759
Number of successful extensions: 1485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)