Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G11
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   187   7e-48
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    31   0.98 
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    29   3.0  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  187 bits (455), Expect = 7e-48
 Identities = 87/144 (60%), Positives = 114/144 (79%), Gaps = 1/144 (0%)
 Frame = +3

Query: 141 REIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETR 320
           +E+EL NK +IIIYVP+P+LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++
Sbjct: 49  KEVELGNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSK 108

Query: 321 VA-YKQKRPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEH 497
               KQKRPRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG ++ KVHLD + QT + H
Sbjct: 109 ARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGH 168

Query: 498 KVDTFQSVYEKLTGREVTFESPEP 569
           K+  F SVY KLTG++VTFE P+P
Sbjct: 169 KIGVFASVYRKLTGKDVTFEFPDP 192



 Score = 35.9 bits (79), Expect = 0.026
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +2

Query: 11  KILKAGAIEPDTFETSISQALVELETNSDLKAQSGGELYITKAK 142
           K+LK+        E  +SQAL++LETN D+++Q   ELYI   K
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQL-KELYIVGVK 49


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 24/86 (27%), Positives = 41/86 (47%)
 Frame = +3

Query: 297 PKPSHETRVAYKQKRPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*N 476
           P    E   A+  + P S     + + VLE  +    IV K++ VK   S L +V    +
Sbjct: 12  PYSFDEVASAFWDRYPNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRVPRWIS 71

Query: 477 QQTTIEHKVDTFQSVYEKLTGREVTF 554
           + T I+      +SVY+K++ + VT+
Sbjct: 72  RMTDIQVVPVIEESVYDKVSKKLVTY 97


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 378 RRHIQKSVSWNGAFSVCRLHVSRGWAWAGSYGHPRTQHAYR 256
           +R +  S++    F+VCR+  + G   AG  G     HAYR
Sbjct: 629 KRRLYDSITGVSRFAVCRISQASGDQRAGRAGRISAGHAYR 669


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,253
Number of Sequences: 27780
Number of extensions: 337772
Number of successful extensions: 816
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)