Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G11
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 152 2e-37
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 151 4e-37
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 151 4e-37
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 146 2e-35
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 146 2e-35
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 30 1.6
At5g40640.1 68418.m04933 expressed protein 29 2.1
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 152 bits (369), Expect = 2e-37
Identities = 75/135 (55%), Positives = 100/135 (74%)
Frame = +3
Query: 159 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQK 338
N+K+++IYVP KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +
Sbjct: 57 NRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----Q 112
Query: 339 RPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQS 518
RPR+RTLTSV++A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T
Sbjct: 113 RPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVG 172
Query: 519 VYEKLTGREVTFESP 563
VY KLTG++V FE P
Sbjct: 173 VYRKLTGKDVVFEYP 187
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 11 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQSGGELYITKA 139
KI K EP E ++QAL +LE TN +LK++ +LYI +A
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSEL-KDLYINQA 49
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 151 bits (366), Expect = 4e-37
Identities = 73/135 (54%), Positives = 101/135 (74%)
Frame = +3
Query: 159 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQK 338
N+K+++IYVP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +
Sbjct: 57 NRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----Q 112
Query: 339 RPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQS 518
RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T
Sbjct: 113 RPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVG 172
Query: 519 VYEKLTGREVTFESP 563
VY KLTG++V FE P
Sbjct: 173 VYRKLTGKDVVFEYP 187
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 11 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQSGGELYITKA 139
KI K + P FE ++QAL +LE TN +LK++ +LYI +A
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSEL-KDLYINQA 49
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 151 bits (366), Expect = 4e-37
Identities = 73/135 (54%), Positives = 101/135 (74%)
Frame = +3
Query: 159 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQK 338
N+K+++IYVP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +
Sbjct: 57 NRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----Q 112
Query: 339 RPRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQS 518
RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T
Sbjct: 113 RPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVG 172
Query: 519 VYEKLTGREVTFESP 563
VY KLTG++V FE P
Sbjct: 173 VYRKLTGKDVVFEYP 187
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 11 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQSGGELYITKA 139
KI K + P FE ++QAL +LE TN +LK++ +LYI +A
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSEL-KDLYINQA 49
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 146 bits (353), Expect = 2e-35
Identities = 69/134 (51%), Positives = 100/134 (74%)
Frame = +3
Query: 162 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQKR 341
+K+I++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+ P + KR
Sbjct: 58 RKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAA----KR 113
Query: 342 PRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQSV 521
PR+RTLTSV++A+L+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +V
Sbjct: 114 PRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAV 173
Query: 522 YEKLTGREVTFESP 563
Y+KLTG++V FE P
Sbjct: 174 YKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 146 bits (353), Expect = 2e-35
Identities = 69/134 (51%), Positives = 100/134 (74%)
Frame = +3
Query: 162 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQKR 341
+K+I++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+ P + KR
Sbjct: 58 RKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAA----KR 113
Query: 342 PRSRTLTSVYDAVLEDLVFPAEIVGKRIRVKLDGSQLIKVHLD*NQQTTIEHKVDTFQSV 521
PR+RTLTSV++A+L+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +V
Sbjct: 114 PRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAV 173
Query: 522 YEKLTGREVTFESP 563
Y+KLTG++V FE P
Sbjct: 174 YKKLTGKDVVFEFP 187
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Frame = +3
Query: 123 CTLPRPREI-ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFV 278
C + R ++ EL + ++II+ PM F+ + R +R++ +K F GK +VF
Sbjct: 630 CNISRGSDLGELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFG 688
Query: 279 GD-RKILP 299
GD R++LP
Sbjct: 689 GDFRQVLP 696
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 207 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHETRVAYKQKRPRSRTLTSVYD 374
F++ + LV++L KH F G + +P+P + QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,952,450
Number of Sequences: 28952
Number of extensions: 315343
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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