Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G09
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0203 + 26348360-26348458,26349584-26349645,26349808-263498... 34 0.048
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584... 31 0.34
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611... 29 2.4
03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350 28 3.2
05_01_0214 - 1615519-1616775 27 5.6
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 27 5.6
08_02_0124 - 12823791-12824213 27 7.3
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 27 7.3
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668... 27 9.7
>05_06_0203 +
26348360-26348458,26349584-26349645,26349808-26349895,
26349985-26350085,26350130-26350223,26350323-26350730,
26351090-26351521,26351612-26351755,26351824-26351940,
26352842-26352949
Length = 550
Score = 34.3 bits (75), Expect = 0.048
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 13 LDSTRGVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQIT 174
+DS+RGV+R YGG + Q S +S D +N N H V+ ++R T
Sbjct: 160 IDSSRGVQRGPYGGTSEDNHGPQH-STASTSEDQNNLNKHPVPAKVDQKNRTTT 212
>07_03_1175 -
24555965-24556117,24557809-24558264,24558270-24558436,
24558468-24558756,24559620-24559726,24559841-24559909,
24560001-24560109
Length = 449
Score = 31.5 bits (68), Expect = 0.34
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 28 GVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQITAMPVRVIIRPG 207
G + +YGG A G YS SG + +S H N + S A+ T +P + +
Sbjct: 155 GGRASEYGGYGAGG-YSSSGGYNATSVLHGNAGGYGSSEAL-----MFTILPTPMALATS 208
Query: 208 TKVHVPIATQSLNTAQ 255
V P+A T +
Sbjct: 209 AIVVSPVAASVETTVE 224
>01_06_1480 - 37660591-37660720,37660899-37660930,37661061-37661155,
37661460-37661527,37661608-37661694,37662884-37662912,
37663019-37663138,37663854-37663905,37663986-37664050,
37664174-37664536,37664637-37664711,37664803-37664940,
37665025-37665181,37665471-37665478,37665576-37665710,
37665965-37666082,37666791-37666915,37667571-37667717,
37668297-37668380,37668671-37668800,37669196-37669347,
37669678-37669857,37670660-37670731,37671104-37671295,
37671366-37671411,37671498-37671647,37671725-37671882,
37671995-37672101,37672191-37672407,37672484-37672696,
37672852-37672972,37673072-37673253,37673475-37673672,
37674770-37674967
Length = 1447
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 232 TQSLNTAQTGAAYDQSSVNSEAEILNNQNQPNIY*PTGQAKHYESAYSYHKEWE 393
T+ + A G A + S++S +L NQN+P TG+ + E+ ++Y E
Sbjct: 1168 TKLSSPASLGLAKEADSIDS-ISLLENQNRPESRSSTGETRASETDHNYSNRRE 1220
>03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350
Length = 358
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 37 RYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQITAMPVRVIIRPGTK 213
RYDYG AS + + HR+ + +N + ++D V + A+P +V + P K
Sbjct: 72 RYDYGNFYASKTFLDTARHRRVLWGWANESDSAAD-DVRKGWAGVQAIPRKVWLAPDGK 129
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Frame = +1
Query: 40 YDYGGQEASGY---YSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQITAMPVRVIIRPGT 210
+D+G G+ +S H S +DH + + + + ++ V + PGT
Sbjct: 182 HDHGHGHGHGHGHGHSHDHDHGGSDHDHHHHEDQEHGHVHHHEDGHGNSITVNLHHHPGT 241
Query: 211 KVHVPIATQSLNTAQTGAAYDQSSVNSEAEILNNQNQPNIY 333
H A + L + G QS + N N + Y
Sbjct: 242 GHHHHDAEEPLLKSDAGCDSTQSGAKDAKKARRNINVHSAY 282
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 217 HVPIATQSLNTAQTGAAYDQS-SVNSEAEILNNQNQPNIY*PTGQAKHYE 363
HV Q++ Q A Y+Q S+ EAE+ +QN +Y T AKH++
Sbjct: 14 HVAKQQQAVRK-QFSARYNQDPSLVDEAELECHQNLQRLYNSTRAAKHFQ 62
>08_02_0124 - 12823791-12824213
Length = 140
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 343 GQAKHYESAYSYHKEWEKHDT 405
G+A E SY EWEK+DT
Sbjct: 33 GRAAKVEDGDSYGSEWEKNDT 53
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 13 LDSTRGVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHS 135
LDS+R +R+DYG G +SG R S S+++ +S
Sbjct: 571 LDSSRSSRRHDYGD---DGRSRRSGRGRSRSRSRSDSDRYS 608
>03_05_1050 -
29966031-29966076,29966180-29966232,29966420-29966845,
29966983-29967060,29967135-29967220,29969054-29969155,
29969221-29969427,29970528-29970885,29971011-29971174,
29971258-29971366,29971595-29971600
Length = 544
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 46 YGGQEAS--GYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQITAMPVRVIIRPGTKVH 219
+ GQ S G + SG H H+N N + ++ ++ ++ +P + +PG +
Sbjct: 24 FSGQSGSVPGAFHHSGLHNI----HANFNLPNMPGSLAQRNAAMSGLPSSGVQQPGGSIS 79
Query: 220 VPIATQSLNTAQTGAAYDQSSVNSEAEI 303
A+ +L + + S V+S +
Sbjct: 80 ARFASNNLPVGMSQLPHGHSGVSSRVNV 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.308 0.122 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,451,609
Number of Sequences: 37544
Number of extensions: 176081
Number of successful extensions: 398
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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