Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G09
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55210.1 68418.m06882 expressed protein similar to unknown pr... 34 0.054
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ... 30 0.88
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 30 0.88
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 29 1.2
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 1.5
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 2.7
At1g67690.1 68414.m07724 peptidase M3 family protein / thimet ol... 28 3.5
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 27 4.7
At1g30320.1 68414.m03708 remorin family protein contains Pfam do... 27 6.2
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 27 8.2
>At5g55210.1 68418.m06882 expressed protein similar to unknown
protein (pir||T04913)
Length = 168
Score = 33.9 bits (74), Expect = 0.054
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +1
Query: 247 TAQTGAAYDQSSVNSEAEILNNQNQPNIY*PTGQAKHYESAYSYHKEWEKHDTKXTENPL 426
T T A S N E + + Y P +H E S E E+ + TE+PL
Sbjct: 72 TPLTSATVTASDANGSGETEESPKRRFRYAPIAMLEHREKVISKDSEIEETEEFDTESPL 131
Query: 427 PKNSEL 444
PK EL
Sbjct: 132 PKAVEL 137
>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
Zea mays
Length = 472
Score = 29.9 bits (64), Expect = 0.88
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +1
Query: 58 EASGYYSQSGSHRQSSYDHSN----TNSHSSDYAVNTQSRQITAMPVRVIIRPGTKVHVP 225
E GY++ H +++Y SN T ++ V QS Q T ++R +P
Sbjct: 300 EQRGYFT-FWQHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMFGATIP 358
Query: 226 IATQSLNTAQTGAAYDQSSVNSEAEILNNQNQPNIY*PTGQ 348
AT L + + S ++ I +NQ NI P G+
Sbjct: 359 YATDILVPRWWNNRFQRGSYSNYPMISDNQLLQNIKAPVGR 399
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 29.9 bits (64), Expect = 0.88
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 205 GTKVHVPIATQSLNTAQTGAAYDQSSVNSEAEILNNQNQPNI 330
G ++ ++ +T A D+SS E+LNN N+P I
Sbjct: 370 GRRLRKKFQVSDSDSDETSARADESSNEDSVEVLNNGNEPKI 411
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +1
Query: 13 LDSTRGVKRYDYGGQEASGYYSQSGSHRQ------SSYDHSNTNSHSSDYAVNTQSRQIT 174
+ S+ G Y YGG E +GYYSQS ++ ++ S +++ + +R
Sbjct: 222 ISSSDGGSSY-YGGDEYNGYYSQSSVAKEDDGSPKKTFRRSGNGKLTAEAVTDAINRASQ 280
Query: 175 AMPVRVIIRP 204
+P V+ P
Sbjct: 281 GLPFEVVFYP 290
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 10 ELDSTRGVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSDY 144
+LD G+ +D E+S G H +DH + ++H D+
Sbjct: 284 DLDYVLGIGGFDLERIESSVNEDDKGDHHDHDHDHHHDHNHDHDH 328
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 28.3 bits (60), Expect = 2.7
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Frame = +1
Query: 40 YDYGGQEA------SGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQITAMPVRVIIR 201
Y YG E+ G Y QSGS++Q ++T S ++Q +Q P
Sbjct: 246 YAYGEMESIRVMAEDGKYDQSGSNQQQQGSIAHTGLISQQQNQHSQMQQYYMQPP----P 301
Query: 202 PGTKVHVPIATQSLNTAQTGAAYDQSSVNSEAEILNNQ 315
P H P S++T + GAA+ + + NN+
Sbjct: 302 PNEYSHYP----SMDTQRMGAAFSTQESDGSSTSENNR 335
>At1g67690.1 68414.m07724 peptidase M3 family protein / thimet
oligopeptidase family protein similar to SP|P42676
Neurolysin, mitochondrial precursor (EC 3.4.24.16)
(Mitochondrial oligopeptidase M) {Rattus norvegicus};
contains Pfam profile PF01432: Peptidase family M3
Length = 672
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 206 EQKCMYQSLLKVLIQHKLVLLMIKVQ*IAKLKF*ITKINPTYINQLGKLST 358
E KC Q L++ + L L IK + + +LK+ I +++ YI L + S+
Sbjct: 148 EAKCYLQCLVRDFEDNGLNLTAIKREEVERLKYEIDELSLRYIQNLNEDSS 198
>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
to chromomethylase CMT3 [Arabidopsis thaliana]
GI:14583092, GI:14647157
Length = 839
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 58 EASGYYSQSGSHRQSSYDHSNTNSHSSDY 144
EASG S+S S + YDH N + +DY
Sbjct: 640 EASGSQSKSKSKKHVLYDHHPLNLNINDY 668
>At1g30320.1 68414.m03708 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 509
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = +1
Query: 43 DYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQITAM----PVRVIIRPGT 210
+YGG +QS SS+DH+ + ++T + P R + G
Sbjct: 252 EYGGDSLIDQSTQSNDLADSSHDHTTGGPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGA 311
Query: 211 KVHVPIATQSLNTAQTGAAYDQSSVN 288
+ T SL + G ++SS++
Sbjct: 312 TTPLRSPTSSLPSTPRGGQPEESSMS 337
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 49 GGQEASGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQITA 177
GG +SG +S SGS SS S ++S S A + QS + A
Sbjct: 611 GGSSSSGSFSSSGS-SSSSDSESGSSSGSDSDADSVQSPFVEA 652
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.308 0.122 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,758,909
Number of Sequences: 28952
Number of extensions: 154971
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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