Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G08
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028)                   33   0.28 
SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34)                   32   0.48 
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)           29   2.6  
SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)                  29   2.6  

>SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028)
          Length = 379

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 390 SGQEKIKSTTTARTTN--AVIYKSGDSSNTTEDVNPCSPFIPPPARGFSAPGRRISEVKC 563
           S Q+K+ S     + N  A+I   GD ++  +   P S   PP  R  S      +  +C
Sbjct: 85  SEQDKLVSHLRQASDNLAAIISMGGDVTDAEDVTIPWSHATPPSGRPLSRVPMTPNMPEC 144

Query: 564 YEFLWNIKVRERGK*THR 617
            E  W + + ERGK  +R
Sbjct: 145 KETDWGLVLTERGKYQNR 162


>SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34)
          Length = 935

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 402 KIKSTTTARTTNAVIY-KSGDSSNTTEDVNPCSPFIPPPARGFSAPGRRISEV 557
           K+ +T +A    A +Y + GD S   +D+N C    P  A+G  A   +I +V
Sbjct: 278 KVITTASALVRRATMYYRKGDISFARKDINSCRKIHPELAKGQGAASIKIGDV 330


>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
          Length = 945

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 272 ATRRKKPSKNQIKFHFNLIICLF-SYSCMSKHL*LIELIFKKS*VIILNYF*YLFIYNKT 96
           A R  + +++ IK   +L+I +F SY+C       I L F      I NY+ Y+   N  
Sbjct: 183 AARNNRKTESNIKLAKSLLIVIFVSYTCFIPAAVCILLNFWSESKAIDNYYTYVLYLNSM 242

Query: 95  LKLV 84
           L  V
Sbjct: 243 LNFV 246


>SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
          Length = 292

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 272 ATRRKKPSKNQIKFHFNLIICLF-SYSCMSKHL*LIELIFKKS*VIILNYF*YLFIYNKT 96
           A R  + +++ IK   +L+I +F SY+C       I L F      I NY+ Y+   N  
Sbjct: 183 AARNNRKTESNIKLAKSLLIVIFVSYTCFIPAAVCILLNFWSESKAIDNYYTYVLYLNSM 242

Query: 95  LKLV 84
           L  V
Sbjct: 243 LNFV 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,008
Number of Sequences: 59808
Number of extensions: 351729
Number of successful extensions: 928
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)