Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G07
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0VJJ3 Cluster: Sensor protein; n=1; Delftia acidovoran...    33   8.3  

>UniRef50_A0VJJ3 Cluster: Sensor protein; n=1; Delftia acidovorans
            SPH-1|Rep: Sensor protein - Delftia acidovorans SPH-1
          Length = 1127

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 138  LISSCVN*TFLEGFSSSRRCSNIGGVCTHFGLSTNACLDYWSICQDACVKQFANVRLPVR 317
            L+ + VN  +L G+  + R    G  C   G++ NA LD  + C DA +  +    +P+R
Sbjct: 933  LVLTDVNMPYLNGYELAERLRAEGVACPIVGVTANAMLDEENRCLDAGMNAWLVKPIPLR 992

Query: 318  QSV 326
              V
Sbjct: 993  TLV 995


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,186,954
Number of Sequences: 1657284
Number of extensions: 11056004
Number of successful extensions: 23707
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23692
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)