Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G07
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    28   1.1  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    27   3.3  
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    25   7.5  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   9.9  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 363  IELVNRLSQASHPHSVLQVNARSRTVLHKHLGKLTNSPNRHSSINQS 223
            + +VNR+S   + H   +   RS    H  L  L N+  +H SIN S
Sbjct: 1214 LPVVNRISSLVNSHMGQKPKRRSLNTSHSSLASLGNASTQH-SINSS 1259


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 210 GVCTHFGLSTNACLDYWSICQDACVKQFANVRLPVRQSVGEKPVKV 347
           G+ + FG+ TN   D+  +   + V +  N+ + +  + G K VK+
Sbjct: 339 GIKSAFGIGTNLTSDFQKVSNPSEVSKPMNIVIKLFSAEGTKAVKI 384


>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 226 KWVHTPPMLEHRRELEKPSRNV*LTQDDISTYS 128
           K+    P+L + R + KPSR V LT  ++  ++
Sbjct: 75  KYFEGKPVLHYIRAVSKPSRKVNLTPSELLQFA 107


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 348 RLSQASHPHSVLQVNARSRTVLHKHLGKLTNSPNRHSSINQSGCIHL 208
           R++ A+  +S+L  +     V   H   L ++   H+S N+S C+ L
Sbjct: 406 RVTSANQAYSILWESLTGERVTPIHAMDLLDNRFTHASPNRSSCVVL 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,345
Number of Sequences: 5004
Number of extensions: 50653
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)