Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G07
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           29   3.4  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   3.4  
SB_53425| Best HMM Match : DUF1103 (HMM E-Value=5.5)                   29   4.5  
SB_51297| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_28270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 246 RHSSINQSGCIHLQ-CWNTVANLRNPREMFN*HKTI 142
           R SS+N  G    Q CWNT+ +L+  RE F    T+
Sbjct: 331 RRSSLNAFGRWITQFCWNTILSLQTAREKFERFYTV 366


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 348 RLSQASHPHSVLQVNARSRTVLHKHLG-KLTNSP 250
           R+++A H ++ LQ   ++ T+LH H G  +T+SP
Sbjct: 41  RITRAGHLNAQLQPTVQAATLLHSHNGPSVTSSP 74


>SB_53425| Best HMM Match : DUF1103 (HMM E-Value=5.5)
          Length = 271

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 288 VLHKHLGKLTNSPNRHSSINQSGCIH-LQCWNTVANLRN 175
           VL KHL KL  +  +H    +  CI  LQC+N+V  L N
Sbjct: 122 VLIKHLNKLMYNQTKHKE-RKHFCISCLQCFNSVGVLAN 159


>SB_51297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 188 RT*ETLEKCLIDTRRYQHLLPQLL**I--DEFRSKKH*KVEERILQTIVRSNIII 30
           RT  TL   L  TR+   LLPQL+  I  D   + +H K+ + I   +V SNI+I
Sbjct: 107 RTSTTLTDYLNKTRKTPGLLPQLILAIGSDVINALRHLKLCDVIHNHVVPSNILI 161


>SB_28270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 188 RT*ETLEKCLIDTRRYQHLLPQLL**I--DEFRSKKH*KVEERILQTIVRSNIII 30
           RT  TL   L  TR+   LLPQL+  I  D   + +H K+ + I   +V SNI+I
Sbjct: 107 RTSTTLTDYLNKTRKTPGLLPQLILAIGSDVINALRHLKLCDVIHNHVVPSNILI 161


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 46  LTIVCSIRSSTF*CFFDLNS-SIYYNNWGSKC*YRLVSIKHFSRVSQVRDGVPTLEVYAP 222
           +++ C  R  +  C +   S S  Y      C YR+VS+    RVS V    P   V + 
Sbjct: 209 VSVSCLYRDVSILCLYRAVSVSCLYRAVSVSCPYRVVSVSCLYRVSVVSVSCPCRAV-SV 267

Query: 223 TLVYRRMP 246
           + +YR +P
Sbjct: 268 SCLYRAVP 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,900,610
Number of Sequences: 59808
Number of extensions: 369589
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)