Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G07
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm rece...    28   5.3  
AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical ...    28   5.3  

>Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical
           protein T26H2.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 19  VNLVIIIFDLTIVCSIRSSTF*CFFDLNSSIYYNNWGSKC*YRLVSIKHFSRV 177
           +  + +IF L    ++    +  FF ++S+I    W  +  Y  +S++ FS V
Sbjct: 38  IRFLFVIFSLLSFLALIFRAYWMFFQISSTILSLGWAERNLYAFISMESFSCV 90


>AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 119 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 CSNIGGVCTHFGLSTNACLDYWSICQDACVKQFANVRL 308
           CS+ G VC    LST+ C  Y ++C+   V+ +   RL
Sbjct: 93  CSSFG-VCVLL-LSTHFCYRYMAVCRPHIVRNYTGARL 128


>AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical
           protein Y45G12C.10 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 CSNIGGVCTHFGLSTNACLDYWSICQDACVKQFANVRL 308
           CS+ G VC    LST+ C  Y ++C+   V+ +   RL
Sbjct: 95  CSSFG-VCVLL-LSTHFCYRYMAVCRPHIVRNYTGARL 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,212
Number of Sequences: 27780
Number of extensions: 281346
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)